Hb_004236_040

Information

Type -
Description -
Location Contig4236: 38057-41035
Sequence    

Annotation

kegg
ID rcu:RCOM_0525570
description Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) (EC:6.4.1.2)
nr
ID AFP99173.1
description biotin carboxyl carrier protein [Vernicia fordii]
swissprot
ID Q9LLC1
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=2 SV=1
trembl
ID J7HI96
description Biotin carboxyl carrier protein OS=Vernicia fordii PE=4 SV=1
Gene Ontology
ID GO:0009317
description biotin carboxyl carrier protein of acetyl- carboxylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41880: 24096-37480 , PASA_asmbl_41881: 38139-40975 , PASA_asmbl_41882: 39443-39745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004236_040 0.0 - - biotin carboxyl carrier protein [Vernicia fordii]
2 Hb_047418_010 0.0727267098 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
3 Hb_003948_020 0.1217195867 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
4 Hb_002411_100 0.1243573397 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_000019_080 0.126577385 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
6 Hb_058620_080 0.1315457429 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
7 Hb_005563_040 0.1346316451 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
8 Hb_000803_170 0.1454675148 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
9 Hb_006620_070 0.1485500852 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
10 Hb_010557_010 0.149313968 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
11 Hb_002272_220 0.1495851792 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005488_160 0.1502223526 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_000352_280 0.1512792907 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
14 Hb_000206_170 0.151882688 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
15 Hb_000442_070 0.1534814819 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
16 Hb_004459_060 0.153568315 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
17 Hb_000977_100 0.1541616964 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
18 Hb_012545_040 0.1573349929 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000390_210 0.15794771 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_000045_050 0.1581369973 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004236_040 Hb_004236_040 Hb_047418_010 Hb_047418_010 Hb_004236_040--Hb_047418_010 Hb_003948_020 Hb_003948_020 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_000019_080 Hb_000019_080 Hb_004236_040--Hb_000019_080 Hb_058620_080 Hb_058620_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040 Hb_047418_010--Hb_000019_080 Hb_047418_010--Hb_058620_080 Hb_047418_010--Hb_003948_020 Hb_004650_050 Hb_004650_050 Hb_047418_010--Hb_004650_050 Hb_000442_070 Hb_000442_070 Hb_047418_010--Hb_000442_070 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_002411_100--Hb_005563_040 Hb_004837_100 Hb_004837_100 Hb_000019_080--Hb_004837_100 Hb_000352_280 Hb_000352_280 Hb_000019_080--Hb_000352_280 Hb_000803_170 Hb_000803_170 Hb_000019_080--Hb_000803_170 Hb_172426_060 Hb_172426_060 Hb_000019_080--Hb_172426_060 Hb_001579_280 Hb_001579_280 Hb_000019_080--Hb_001579_280 Hb_000019_080--Hb_010557_010 Hb_000544_080 Hb_000544_080 Hb_058620_080--Hb_000544_080 Hb_009393_130 Hb_009393_130 Hb_058620_080--Hb_009393_130 Hb_058620_080--Hb_010557_010 Hb_058620_080--Hb_000803_170 Hb_011519_050 Hb_011519_050 Hb_058620_080--Hb_011519_050 Hb_007803_040 Hb_007803_040 Hb_058620_080--Hb_007803_040 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_005563_040--Hb_000442_070 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36095 0.385495 21.8379 11.0606 0.785373 0.616635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02049 2.12979 4.01316 1.42136 26.5369

CAGE analysis