Hb_005779_020

Information

Type -
Description -
Location Contig5779: 18195-20724
Sequence    

Annotation

kegg
ID rcu:RCOM_1609360
description hypothetical protein
nr
ID XP_002511632.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B6SGC5
description Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1
trembl
ID B9RD43
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49712: 17897-20714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000977_100 0.1030737725 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
3 Hb_004236_040 0.1591022268 - - biotin carboxyl carrier protein [Vernicia fordii]
4 Hb_177281_010 0.159203809 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
5 Hb_047418_010 0.1625568115 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
6 Hb_000206_170 0.1660677737 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
7 Hb_005271_100 0.1721798038 - - unnamed protein product [Vitis vinifera]
8 Hb_089966_010 0.1743519557 - - -
9 Hb_000711_030 0.1851066512 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
10 Hb_004650_050 0.1919361321 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
11 Hb_058620_080 0.1920881081 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
12 Hb_001623_380 0.1932431354 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
13 Hb_002272_220 0.1946155096 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005237_020 0.1951415388 - - Kinesin heavy chain, putative [Ricinus communis]
15 Hb_000749_260 0.1952364599 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
16 Hb_000116_320 0.1968367635 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_006153_150 0.1980623257 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
18 Hb_015175_040 0.200882102 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001163_110 0.2013723949 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
20 Hb_000961_060 0.2022406324 - - uvb-resistance protein uvr8, putative [Ricinus communis]

Gene co-expression network

sample Hb_005779_020 Hb_005779_020 Hb_000977_100 Hb_000977_100 Hb_005779_020--Hb_000977_100 Hb_004236_040 Hb_004236_040 Hb_005779_020--Hb_004236_040 Hb_177281_010 Hb_177281_010 Hb_005779_020--Hb_177281_010 Hb_047418_010 Hb_047418_010 Hb_005779_020--Hb_047418_010 Hb_000206_170 Hb_000206_170 Hb_005779_020--Hb_000206_170 Hb_005271_100 Hb_005271_100 Hb_005779_020--Hb_005271_100 Hb_000977_100--Hb_177281_010 Hb_000977_100--Hb_005271_100 Hb_000977_100--Hb_047418_010 Hb_000977_100--Hb_004236_040 Hb_001623_380 Hb_001623_380 Hb_000977_100--Hb_001623_380 Hb_004236_040--Hb_047418_010 Hb_003948_020 Hb_003948_020 Hb_004236_040--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_004236_040--Hb_002411_100 Hb_000019_080 Hb_000019_080 Hb_004236_040--Hb_000019_080 Hb_058620_080 Hb_058620_080 Hb_004236_040--Hb_058620_080 Hb_005563_040 Hb_005563_040 Hb_004236_040--Hb_005563_040 Hb_000393_040 Hb_000393_040 Hb_177281_010--Hb_000393_040 Hb_001135_070 Hb_001135_070 Hb_177281_010--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_177281_010--Hb_000974_040 Hb_177281_010--Hb_001623_380 Hb_137216_010 Hb_137216_010 Hb_177281_010--Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_177281_010--Hb_002495_090 Hb_047418_010--Hb_000019_080 Hb_047418_010--Hb_058620_080 Hb_047418_010--Hb_003948_020 Hb_004650_050 Hb_004650_050 Hb_047418_010--Hb_004650_050 Hb_000442_070 Hb_000442_070 Hb_047418_010--Hb_000442_070 Hb_000206_170--Hb_002411_100 Hb_011519_050 Hb_011519_050 Hb_000206_170--Hb_011519_050 Hb_001405_090 Hb_001405_090 Hb_000206_170--Hb_001405_090 Hb_004459_060 Hb_004459_060 Hb_000206_170--Hb_004459_060 Hb_006620_070 Hb_006620_070 Hb_000206_170--Hb_006620_070 Hb_002272_220 Hb_002272_220 Hb_000206_170--Hb_002272_220 Hb_005237_020 Hb_005237_020 Hb_005271_100--Hb_005237_020 Hb_000958_060 Hb_000958_060 Hb_005271_100--Hb_000958_060 Hb_005271_100--Hb_177281_010 Hb_000961_060 Hb_000961_060 Hb_005271_100--Hb_000961_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.35833 0.604572 0.0417396 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0962039 0.151226 0.13287 0.03095 1.17663

CAGE analysis