Hb_005271_100

Information

Type -
Description -
Location Contig5271: 67207-71555
Sequence    

Annotation

kegg
ID rcu:RCOM_1686320
description GTP binding protein, putative
nr
ID CBI34691.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9LUM1
description Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1
trembl
ID A0A067JN93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20617 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_100 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000977_100 0.1526736372 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
3 Hb_005779_020 0.1721798038 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005237_020 0.1754579767 - - Kinesin heavy chain, putative [Ricinus communis]
5 Hb_000958_060 0.1802089385 - - conserved hypothetical protein [Ricinus communis]
6 Hb_177281_010 0.1908249581 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
7 Hb_000961_060 0.19871116 - - uvb-resistance protein uvr8, putative [Ricinus communis]
8 Hb_145188_010 0.2019034151 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
9 Hb_019613_030 0.2042800947 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
10 Hb_000974_040 0.208644378 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
11 Hb_002843_130 0.2087177869 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
12 Hb_005736_120 0.2092536106 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
13 Hb_008221_190 0.2096388642 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
14 Hb_163950_090 0.2112580922 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
15 Hb_000483_270 0.2115834373 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
16 Hb_001366_350 0.2158032813 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
17 Hb_015175_040 0.2163653536 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000116_320 0.2168530841 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_000711_030 0.2180479133 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
20 Hb_023344_090 0.2182551534 - - Photosystem II reaction center W protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005271_100 Hb_005271_100 Hb_000977_100 Hb_000977_100 Hb_005271_100--Hb_000977_100 Hb_005779_020 Hb_005779_020 Hb_005271_100--Hb_005779_020 Hb_005237_020 Hb_005237_020 Hb_005271_100--Hb_005237_020 Hb_000958_060 Hb_000958_060 Hb_005271_100--Hb_000958_060 Hb_177281_010 Hb_177281_010 Hb_005271_100--Hb_177281_010 Hb_000961_060 Hb_000961_060 Hb_005271_100--Hb_000961_060 Hb_000977_100--Hb_005779_020 Hb_000977_100--Hb_177281_010 Hb_047418_010 Hb_047418_010 Hb_000977_100--Hb_047418_010 Hb_004236_040 Hb_004236_040 Hb_000977_100--Hb_004236_040 Hb_001623_380 Hb_001623_380 Hb_000977_100--Hb_001623_380 Hb_005779_020--Hb_004236_040 Hb_005779_020--Hb_177281_010 Hb_005779_020--Hb_047418_010 Hb_000206_170 Hb_000206_170 Hb_005779_020--Hb_000206_170 Hb_000032_610 Hb_000032_610 Hb_005237_020--Hb_000032_610 Hb_000465_410 Hb_000465_410 Hb_005237_020--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_005237_020--Hb_002701_070 Hb_019613_030 Hb_019613_030 Hb_005237_020--Hb_019613_030 Hb_000749_260 Hb_000749_260 Hb_005237_020--Hb_000749_260 Hb_021346_050 Hb_021346_050 Hb_005237_020--Hb_021346_050 Hb_008221_190 Hb_008221_190 Hb_000958_060--Hb_008221_190 Hb_007520_050 Hb_007520_050 Hb_000958_060--Hb_007520_050 Hb_001369_460 Hb_001369_460 Hb_000958_060--Hb_001369_460 Hb_163950_090 Hb_163950_090 Hb_000958_060--Hb_163950_090 Hb_000107_580 Hb_000107_580 Hb_000958_060--Hb_000107_580 Hb_002710_040 Hb_002710_040 Hb_000958_060--Hb_002710_040 Hb_000393_040 Hb_000393_040 Hb_177281_010--Hb_000393_040 Hb_001135_070 Hb_001135_070 Hb_177281_010--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_177281_010--Hb_000974_040 Hb_177281_010--Hb_001623_380 Hb_137216_010 Hb_137216_010 Hb_177281_010--Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_177281_010--Hb_002495_090 Hb_002843_130 Hb_002843_130 Hb_000961_060--Hb_002843_130 Hb_000483_270 Hb_000483_270 Hb_000961_060--Hb_000483_270 Hb_007317_100 Hb_007317_100 Hb_000961_060--Hb_007317_100 Hb_000123_360 Hb_000123_360 Hb_000961_060--Hb_000123_360 Hb_003517_110 Hb_003517_110 Hb_000961_060--Hb_003517_110 Hb_000961_060--Hb_001135_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.966536 0.172874 0.0199532 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0487339 0.0383301 0.0706953 0.0924169 0.550114

CAGE analysis