Hb_000235_040

Information

Type -
Description -
Location Contig235: 84935-88164
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007039mg
description hypothetical protein
nr
ID XP_011043948.1
description PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
swissprot
ID Q5XF57
description Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
trembl
ID A0A067KGW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10341 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like serine threonine-protein kinase at5g57670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24610: 85262-85527 , PASA_asmbl_24611: 85944-88085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000235_040 0.0 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
2 Hb_022693_010 0.0892056272 - - pectin acetylesterase, putative [Ricinus communis]
3 Hb_001210_060 0.1089395188 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
4 Hb_002025_070 0.1129961814 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
5 Hb_000076_060 0.1137758241 - - hypothetical protein RCOM_0586940 [Ricinus communis]
6 Hb_027472_060 0.1149689717 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
7 Hb_001538_080 0.1180937479 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
8 Hb_004052_030 0.1197599723 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
9 Hb_000424_140 0.1201009664 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
10 Hb_003058_170 0.1220235182 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
11 Hb_000847_030 0.1258625982 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
12 Hb_000477_090 0.125923948 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
13 Hb_003777_140 0.1263682277 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003018_150 0.1264234859 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
15 Hb_005569_010 0.1271322642 - - Heme-binding protein, putative [Ricinus communis]
16 Hb_044478_010 0.1275980114 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
17 Hb_000984_160 0.1279286766 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
18 Hb_000670_070 0.1289858174 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
19 Hb_016093_030 0.1294180689 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_000608_190 0.134537969 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]

Gene co-expression network

sample Hb_000235_040 Hb_000235_040 Hb_022693_010 Hb_022693_010 Hb_000235_040--Hb_022693_010 Hb_001210_060 Hb_001210_060 Hb_000235_040--Hb_001210_060 Hb_002025_070 Hb_002025_070 Hb_000235_040--Hb_002025_070 Hb_000076_060 Hb_000076_060 Hb_000235_040--Hb_000076_060 Hb_027472_060 Hb_027472_060 Hb_000235_040--Hb_027472_060 Hb_001538_080 Hb_001538_080 Hb_000235_040--Hb_001538_080 Hb_008112_020 Hb_008112_020 Hb_022693_010--Hb_008112_020 Hb_004052_030 Hb_004052_030 Hb_022693_010--Hb_004052_030 Hb_000847_030 Hb_000847_030 Hb_022693_010--Hb_000847_030 Hb_006472_040 Hb_006472_040 Hb_022693_010--Hb_006472_040 Hb_022693_010--Hb_001210_060 Hb_001210_060--Hb_000847_030 Hb_003018_150 Hb_003018_150 Hb_001210_060--Hb_003018_150 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_029879_150 Hb_029879_150 Hb_002025_070--Hb_029879_150 Hb_002025_070--Hb_022693_010 Hb_000139_360 Hb_000139_360 Hb_002025_070--Hb_000139_360 Hb_002042_210 Hb_002042_210 Hb_002025_070--Hb_002042_210 Hb_016093_030 Hb_016093_030 Hb_002025_070--Hb_016093_030 Hb_003058_170 Hb_003058_170 Hb_000076_060--Hb_003058_170 Hb_005569_010 Hb_005569_010 Hb_000076_060--Hb_005569_010 Hb_001098_040 Hb_001098_040 Hb_000076_060--Hb_001098_040 Hb_000665_210 Hb_000665_210 Hb_000076_060--Hb_000665_210 Hb_000977_020 Hb_000977_020 Hb_000076_060--Hb_000977_020 Hb_009421_070 Hb_009421_070 Hb_000076_060--Hb_009421_070 Hb_004032_280 Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_027472_060--Hb_000031_180 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_000599_150 Hb_000599_150 Hb_027472_060--Hb_000599_150 Hb_001538_080--Hb_000103_130 Hb_001538_080--Hb_001210_060 Hb_097335_010 Hb_097335_010 Hb_001538_080--Hb_097335_010 Hb_001538_080--Hb_027472_060 Hb_005730_060 Hb_005730_060 Hb_001538_080--Hb_005730_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16865 9.84554 13.6005 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0306642 0.868483 0.408172 1.9255 24.4435

CAGE analysis