Hb_029879_150

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig29879: 117480-124041
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_006382142.1
description putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31246: 120851-121223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_150 0.0 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
2 Hb_003162_060 0.1004459829 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_002025_070 0.1081595593 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
4 Hb_020956_030 0.1092222191 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
5 Hb_002336_050 0.1100597259 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_027472_060 0.111629509 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
7 Hb_005532_030 0.1162228733 - - DNA binding protein, putative [Ricinus communis]
8 Hb_006831_090 0.119762174 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
9 Hb_004032_280 0.1209523484 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
10 Hb_000031_180 0.1209864601 - - sarcosine oxidase, putative [Ricinus communis]
11 Hb_004563_010 0.1213497834 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_086300_010 0.1222167877 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_001538_080 0.1249492574 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_008195_090 0.1258593052 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000590_110 0.1272660601 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008536_020 0.1297827816 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_002600_170 0.1305315569 - - conserved hypothetical protein [Ricinus communis]
18 Hb_172426_070 0.1306734738 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
19 Hb_000329_780 0.1322062215 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
20 Hb_002374_180 0.1326463058 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]

Gene co-expression network

sample Hb_029879_150 Hb_029879_150 Hb_003162_060 Hb_003162_060 Hb_029879_150--Hb_003162_060 Hb_002025_070 Hb_002025_070 Hb_029879_150--Hb_002025_070 Hb_020956_030 Hb_020956_030 Hb_029879_150--Hb_020956_030 Hb_002336_050 Hb_002336_050 Hb_029879_150--Hb_002336_050 Hb_027472_060 Hb_027472_060 Hb_029879_150--Hb_027472_060 Hb_005532_030 Hb_005532_030 Hb_029879_150--Hb_005532_030 Hb_003162_060--Hb_020956_030 Hb_086300_010 Hb_086300_010 Hb_003162_060--Hb_086300_010 Hb_003162_060--Hb_005532_030 Hb_026549_060 Hb_026549_060 Hb_003162_060--Hb_026549_060 Hb_001541_200 Hb_001541_200 Hb_003162_060--Hb_001541_200 Hb_001141_100 Hb_001141_100 Hb_003162_060--Hb_001141_100 Hb_022693_010 Hb_022693_010 Hb_002025_070--Hb_022693_010 Hb_000235_040 Hb_000235_040 Hb_002025_070--Hb_000235_040 Hb_000139_360 Hb_000139_360 Hb_002025_070--Hb_000139_360 Hb_002042_210 Hb_002042_210 Hb_002025_070--Hb_002042_210 Hb_016093_030 Hb_016093_030 Hb_002025_070--Hb_016093_030 Hb_020956_030--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_020956_030--Hb_001433_090 Hb_020956_030--Hb_026549_060 Hb_020956_030--Hb_086300_010 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020 Hb_004563_010 Hb_004563_010 Hb_002336_050--Hb_004563_010 Hb_002336_050--Hb_005532_030 Hb_008536_020 Hb_008536_020 Hb_002336_050--Hb_008536_020 Hb_006831_090 Hb_006831_090 Hb_002336_050--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_002336_050--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_002336_050--Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_027472_060--Hb_000031_180 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_000599_150 Hb_000599_150 Hb_027472_060--Hb_000599_150 Hb_002374_180 Hb_002374_180 Hb_005532_030--Hb_002374_180 Hb_005532_030--Hb_002600_170 Hb_005532_030--Hb_006831_090 Hb_005532_030--Hb_086300_010 Hb_005532_030--Hb_000329_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013246 0.0253417 0.474359 0.710856 0 0.0103429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0404651 0.0376954 1.06075

CAGE analysis