Hb_000139_360

Information

Type -
Description -
Location Contig139: 379195-380033
Sequence    

Annotation

kegg
ID tcc:TCM_020542
description hypothetical protein
nr
ID XP_012069551.1
description PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10665: 379249-380010
cDNA
(Sanger)
(ID:Location)		 007_G10.ab1: 379249-380008 , 019_G17.ab1: 379302-380010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_360 0.0 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
2 Hb_000696_060 0.0791771381 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008195_090 0.0822819935 - - conserved hypothetical protein [Ricinus communis]
4 Hb_044478_010 0.0876685487 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
5 Hb_172426_070 0.0893730414 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
6 Hb_029991_010 0.0904977959 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
7 Hb_002387_010 0.0911206374 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
8 Hb_001491_070 0.0912005888 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
9 Hb_001735_040 0.0915401942 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
10 Hb_011618_010 0.0918231766 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
11 Hb_131466_010 0.0925308079 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
12 Hb_000590_110 0.0930367944 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006132_080 0.0941746489 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
14 Hb_002042_210 0.0956950586 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
15 Hb_033187_010 0.0960710022 - - epoxide hydrolase, putative [Ricinus communis]
16 Hb_001894_100 0.097561425 - - PREDICTED: kininogen-1-like [Jatropha curcas]
17 Hb_041139_010 0.0984721552 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
18 Hb_004607_110 0.0998974888 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
19 Hb_003151_020 0.1006009381 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_002805_280 0.1021833501 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_000139_360 Hb_000139_360 Hb_000696_060 Hb_000696_060 Hb_000139_360--Hb_000696_060 Hb_008195_090 Hb_008195_090 Hb_000139_360--Hb_008195_090 Hb_044478_010 Hb_044478_010 Hb_000139_360--Hb_044478_010 Hb_172426_070 Hb_172426_070 Hb_000139_360--Hb_172426_070 Hb_029991_010 Hb_029991_010 Hb_000139_360--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_000139_360--Hb_002387_010 Hb_033187_010 Hb_033187_010 Hb_000696_060--Hb_033187_010 Hb_000696_060--Hb_002387_010 Hb_000979_120 Hb_000979_120 Hb_000696_060--Hb_000979_120 Hb_006132_080 Hb_006132_080 Hb_000696_060--Hb_006132_080 Hb_000589_410 Hb_000589_410 Hb_000696_060--Hb_000589_410 Hb_002805_280 Hb_002805_280 Hb_008195_090--Hb_002805_280 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_008195_090--Hb_029991_010 Hb_008195_090--Hb_002387_010 Hb_033681_030 Hb_033681_030 Hb_008195_090--Hb_033681_030 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_002042_210 Hb_002042_210 Hb_044478_010--Hb_002042_210 Hb_131466_010 Hb_131466_010 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_005111_040 Hb_005111_040 Hb_044478_010--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_044478_010--Hb_001999_230 Hb_003163_010 Hb_003163_010 Hb_172426_070--Hb_003163_010 Hb_006831_090 Hb_006831_090 Hb_172426_070--Hb_006831_090 Hb_001491_070 Hb_001491_070 Hb_172426_070--Hb_001491_070 Hb_002600_170 Hb_002600_170 Hb_172426_070--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_172426_070--Hb_004032_280 Hb_008536_020 Hb_008536_020 Hb_172426_070--Hb_008536_020 Hb_029991_010--Hb_131466_010 Hb_004607_110 Hb_004607_110 Hb_029991_010--Hb_004607_110 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_028491_010 Hb_028491_010 Hb_029991_010--Hb_028491_010 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050 Hb_002387_010--Hb_002805_280 Hb_002387_010--Hb_004607_110 Hb_002387_010--Hb_044478_010 Hb_002387_010--Hb_029991_010 Hb_003913_120 Hb_003913_120 Hb_002387_010--Hb_003913_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.333486 0.860213 93.0079 90.0034 0.0610001 0.0411136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0749445 0.471377 0.528874 8.01266 197.538

CAGE analysis