Hb_002170_080

Information

Type -
Description -
Location Contig2170: 163272-167517
Sequence    

Annotation

kegg
ID rcu:RCOM_0084940
description Sialin, putative
nr
ID AJH76873.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q7XJR2
description Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2
trembl
ID A0A0B5WYW1
description PT4;3 protein OS=Manihot esculenta GN=PT4;3 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable anion transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22417: 163735-166384 , PASA_asmbl_22418: 166598-167308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_080 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_022137_050 0.1163547086 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
3 Hb_009316_050 0.1425033825 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
4 Hb_022693_010 0.1551502249 - - pectin acetylesterase, putative [Ricinus communis]
5 Hb_000041_250 0.1570691695 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
6 Hb_000235_040 0.1608413139 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
7 Hb_009393_140 0.1647948528 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
8 Hb_009296_030 0.165195008 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
9 Hb_000252_180 0.1662679911 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
10 Hb_015141_010 0.1663301699 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
11 Hb_074197_030 0.1679652535 - - unnamed protein product [Vitis vinifera]
12 Hb_004374_160 0.1683004499 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
13 Hb_011282_040 0.1692089768 - - Sec14 cytosolic factor, putative [Ricinus communis]
14 Hb_000139_270 0.1721845585 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
15 Hb_001691_180 0.1749561835 - - phosphoglycerate mutase, putative [Ricinus communis]
16 Hb_000638_100 0.1769533405 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
17 Hb_005154_080 0.1776787703 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640764 [Jatropha curcas]
18 Hb_001384_040 0.1802721585 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_000054_030 0.1813415585 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
20 Hb_006472_040 0.181457763 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002170_080 Hb_002170_080 Hb_022137_050 Hb_022137_050 Hb_002170_080--Hb_022137_050 Hb_009316_050 Hb_009316_050 Hb_002170_080--Hb_009316_050 Hb_022693_010 Hb_022693_010 Hb_002170_080--Hb_022693_010 Hb_000041_250 Hb_000041_250 Hb_002170_080--Hb_000041_250 Hb_000235_040 Hb_000235_040 Hb_002170_080--Hb_000235_040 Hb_009393_140 Hb_009393_140 Hb_002170_080--Hb_009393_140 Hb_009296_030 Hb_009296_030 Hb_022137_050--Hb_009296_030 Hb_015141_010 Hb_015141_010 Hb_022137_050--Hb_015141_010 Hb_002477_020 Hb_002477_020 Hb_022137_050--Hb_002477_020 Hb_000352_280 Hb_000352_280 Hb_022137_050--Hb_000352_280 Hb_006472_040 Hb_006472_040 Hb_022137_050--Hb_006472_040 Hb_006922_070 Hb_006922_070 Hb_009316_050--Hb_006922_070 Hb_027654_010 Hb_027654_010 Hb_009316_050--Hb_027654_010 Hb_010381_080 Hb_010381_080 Hb_009316_050--Hb_010381_080 Hb_000907_130 Hb_000907_130 Hb_009316_050--Hb_000907_130 Hb_002835_050 Hb_002835_050 Hb_009316_050--Hb_002835_050 Hb_022693_010--Hb_000235_040 Hb_008112_020 Hb_008112_020 Hb_022693_010--Hb_008112_020 Hb_004052_030 Hb_004052_030 Hb_022693_010--Hb_004052_030 Hb_000847_030 Hb_000847_030 Hb_022693_010--Hb_000847_030 Hb_022693_010--Hb_006472_040 Hb_001210_060 Hb_001210_060 Hb_022693_010--Hb_001210_060 Hb_000638_100 Hb_000638_100 Hb_000041_250--Hb_000638_100 Hb_005348_120 Hb_005348_120 Hb_000041_250--Hb_005348_120 Hb_006915_010 Hb_006915_010 Hb_000041_250--Hb_006915_010 Hb_004162_250 Hb_004162_250 Hb_000041_250--Hb_004162_250 Hb_000675_010 Hb_000675_010 Hb_000041_250--Hb_000675_010 Hb_000107_540 Hb_000107_540 Hb_000041_250--Hb_000107_540 Hb_000235_040--Hb_001210_060 Hb_002025_070 Hb_002025_070 Hb_000235_040--Hb_002025_070 Hb_000076_060 Hb_000076_060 Hb_000235_040--Hb_000076_060 Hb_027472_060 Hb_027472_060 Hb_000235_040--Hb_027472_060 Hb_001538_080 Hb_001538_080 Hb_000235_040--Hb_001538_080 Hb_000679_320 Hb_000679_320 Hb_009393_140--Hb_000679_320 Hb_000252_180 Hb_000252_180 Hb_009393_140--Hb_000252_180 Hb_009393_140--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_009393_140--Hb_000359_160 Hb_004979_050 Hb_004979_050 Hb_009393_140--Hb_004979_050 Hb_022693_020 Hb_022693_020 Hb_009393_140--Hb_022693_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0104729 0.160979 4.86789 4.06312 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285717 1.1615 0.177389 1.80452 11.9787

CAGE analysis