Hb_000139_270

Information

Type -
Description -
Location Contig139: 309884-310939
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14890g
description POPTRDRAFT_657124; hypothetical protein
nr
ID XP_002312517.1
description hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
swissprot
ID Q6NMR8
description Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1
trembl
ID B9HJU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s14890g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_270 0.0 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
2 Hb_000612_090 0.1369503531 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
3 Hb_022137_050 0.1439060931 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
4 Hb_002235_110 0.1448159097 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_074197_030 0.1485710843 - - unnamed protein product [Vitis vinifera]
6 Hb_005493_010 0.1509945292 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_006420_010 0.1522069807 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
8 Hb_003849_070 0.1559486316 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
9 Hb_001124_230 0.1565993878 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
10 Hb_000975_050 0.1574107875 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
11 Hb_000054_030 0.1592697046 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
12 Hb_000002_300 0.1601786069 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
13 Hb_000856_280 0.1615782485 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
14 Hb_002811_250 0.1622974808 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
15 Hb_000441_050 0.1638069749 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
16 Hb_000352_280 0.1656298854 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
17 Hb_004357_060 0.1658301506 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
18 Hb_000618_110 0.1685091162 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
19 Hb_004096_210 0.168580889 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
20 Hb_004242_170 0.1687687698 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]

Gene co-expression network

sample Hb_000139_270 Hb_000139_270 Hb_000612_090 Hb_000612_090 Hb_000139_270--Hb_000612_090 Hb_022137_050 Hb_022137_050 Hb_000139_270--Hb_022137_050 Hb_002235_110 Hb_002235_110 Hb_000139_270--Hb_002235_110 Hb_074197_030 Hb_074197_030 Hb_000139_270--Hb_074197_030 Hb_005493_010 Hb_005493_010 Hb_000139_270--Hb_005493_010 Hb_006420_010 Hb_006420_010 Hb_000139_270--Hb_006420_010 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_000612_090--Hb_074197_030 Hb_000612_090--Hb_002235_110 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_002817_040 Hb_002817_040 Hb_000612_090--Hb_002817_040 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060 Hb_009296_030 Hb_009296_030 Hb_022137_050--Hb_009296_030 Hb_015141_010 Hb_015141_010 Hb_022137_050--Hb_015141_010 Hb_002477_020 Hb_002477_020 Hb_022137_050--Hb_002477_020 Hb_002170_080 Hb_002170_080 Hb_022137_050--Hb_002170_080 Hb_000352_280 Hb_000352_280 Hb_022137_050--Hb_000352_280 Hb_006472_040 Hb_006472_040 Hb_022137_050--Hb_006472_040 Hb_002949_020 Hb_002949_020 Hb_002235_110--Hb_002949_020 Hb_002235_110--Hb_074197_030 Hb_000054_030 Hb_000054_030 Hb_002235_110--Hb_000054_030 Hb_005276_070 Hb_005276_070 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_074197_030--Hb_000352_280 Hb_074197_030--Hb_015141_010 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_002817_050 Hb_002817_050 Hb_005493_010--Hb_002817_050 Hb_030827_010 Hb_030827_010 Hb_005493_010--Hb_030827_010 Hb_001278_090 Hb_001278_090 Hb_005493_010--Hb_001278_090 Hb_005493_010--Hb_002949_020 Hb_005493_010--Hb_002235_110 Hb_005493_010--Hb_074197_030 Hb_158092_100 Hb_158092_100 Hb_006420_010--Hb_158092_100 Hb_007904_060 Hb_007904_060 Hb_006420_010--Hb_007904_060 Hb_000264_280 Hb_000264_280 Hb_006420_010--Hb_000264_280 Hb_000108_150 Hb_000108_150 Hb_006420_010--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_006420_010--Hb_000061_250 Hb_004162_270 Hb_004162_270 Hb_006420_010--Hb_004162_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475881 2.84137 19.2475 16.452 2.58152 0.881525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0947443 4.43393 0.825832 6.65938 43.2294

CAGE analysis