Hb_003026_040

Information

Type -
Description -
Location Contig3026: 93547-94606
Sequence    

Annotation

kegg
ID tcc:TCM_007861
description hypothetical protein
nr
ID XP_007043430.1
description Uncharacterized protein TCM_007861 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E4J7
description Uncharacterized protein OS=Theobroma cacao GN=TCM_007861 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 019_M12.ab1: 93476-93685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003026_040 0.0 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
2 Hb_000763_040 0.1020433915 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_000525_070 0.1356529164 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
4 Hb_000915_250 0.1361082748 - - chloroplast latex aldolase-like protein [Manihot esculenta]
5 Hb_001969_100 0.1500440517 - - signal transducer, putative [Ricinus communis]
6 Hb_000261_470 0.1537124169 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
7 Hb_011537_140 0.1657796619 - - hypothetical protein POPTR_0001s05320g [Populus trichocarpa]
8 Hb_002641_020 0.1710457862 - - 3'-5' exonuclease, putative [Ricinus communis]
9 Hb_004525_010 0.1722912719 - - late embryogenesis abundant, putative [Ricinus communis]
10 Hb_006198_030 0.1772006017 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009193_020 0.1790345771 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
12 Hb_008484_080 0.1812044403 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
13 Hb_099182_010 0.1827232229 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
14 Hb_000985_150 0.1833667666 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
15 Hb_000191_090 0.1834033181 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
16 Hb_007101_120 0.1845676724 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
17 Hb_004837_230 0.1848976334 - - unknown [Populus trichocarpa]
18 Hb_000482_170 0.1850245033 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
19 Hb_000003_490 0.1874745064 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
20 Hb_000676_320 0.1877464289 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]

Gene co-expression network

sample Hb_003026_040 Hb_003026_040 Hb_000763_040 Hb_000763_040 Hb_003026_040--Hb_000763_040 Hb_000525_070 Hb_000525_070 Hb_003026_040--Hb_000525_070 Hb_000915_250 Hb_000915_250 Hb_003026_040--Hb_000915_250 Hb_001969_100 Hb_001969_100 Hb_003026_040--Hb_001969_100 Hb_000261_470 Hb_000261_470 Hb_003026_040--Hb_000261_470 Hb_011537_140 Hb_011537_140 Hb_003026_040--Hb_011537_140 Hb_000763_040--Hb_000915_250 Hb_004525_010 Hb_004525_010 Hb_000763_040--Hb_004525_010 Hb_000334_290 Hb_000334_290 Hb_000763_040--Hb_000334_290 Hb_000254_020 Hb_000254_020 Hb_000763_040--Hb_000254_020 Hb_000985_150 Hb_000985_150 Hb_000763_040--Hb_000985_150 Hb_011282_040 Hb_011282_040 Hb_000525_070--Hb_011282_040 Hb_000525_070--Hb_000763_040 Hb_000525_070--Hb_001969_100 Hb_000525_070--Hb_000915_250 Hb_001268_170 Hb_001268_170 Hb_000525_070--Hb_001268_170 Hb_000915_250--Hb_004525_010 Hb_004837_230 Hb_004837_230 Hb_000915_250--Hb_004837_230 Hb_009193_020 Hb_009193_020 Hb_000915_250--Hb_009193_020 Hb_000915_250--Hb_000254_020 Hb_000915_250--Hb_000334_290 Hb_001969_100--Hb_000261_470 Hb_001133_100 Hb_001133_100 Hb_001969_100--Hb_001133_100 Hb_010407_090 Hb_010407_090 Hb_001969_100--Hb_010407_090 Hb_006916_080 Hb_006916_080 Hb_001969_100--Hb_006916_080 Hb_000261_470--Hb_011537_140 Hb_000367_230 Hb_000367_230 Hb_000261_470--Hb_000367_230 Hb_020805_050 Hb_020805_050 Hb_000261_470--Hb_020805_050 Hb_007101_120 Hb_007101_120 Hb_000261_470--Hb_007101_120 Hb_000261_470--Hb_004837_230 Hb_001287_020 Hb_001287_020 Hb_000261_470--Hb_001287_020 Hb_011537_140--Hb_007101_120 Hb_000003_490 Hb_000003_490 Hb_011537_140--Hb_000003_490 Hb_011537_140--Hb_004837_230 Hb_000191_090 Hb_000191_090 Hb_011537_140--Hb_000191_090 Hb_011537_140--Hb_020805_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.79306 0.475051 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.596601 0.156302 0 5.81774

CAGE analysis