Hb_000525_070

Information

Type -
Description -
Location Contig525: 115119-116986
Sequence    

Annotation

kegg
ID rcu:RCOM_0851800
description Auxin-induced protein 5NG4, putative
nr
ID XP_012082012.1
description PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RUC7
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0851800 PE=4 SV=1
Gene Ontology
ID GO:0016020
description wat1-related protein at5g40240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46963: 115271-115855 , PASA_asmbl_46964: 116037-117035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_070 0.0 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
2 Hb_003026_040 0.1356529164 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
3 Hb_011282_040 0.1399438978 - - Sec14 cytosolic factor, putative [Ricinus communis]
4 Hb_000763_040 0.1481674334 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_001969_100 0.160209713 - - signal transducer, putative [Ricinus communis]
6 Hb_000915_250 0.1704933674 - - chloroplast latex aldolase-like protein [Manihot esculenta]
7 Hb_001268_170 0.1724971892 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
8 Hb_002641_020 0.1739069642 - - 3'-5' exonuclease, putative [Ricinus communis]
9 Hb_000676_320 0.1784757388 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
10 Hb_000254_020 0.1789378435 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
11 Hb_006198_030 0.1812763969 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000390_160 0.1837623752 - - PREDICTED: adenosine kinase [Jatropha curcas]
13 Hb_001141_340 0.1844870554 - - PREDICTED: cysteine synthase [Jatropha curcas]
14 Hb_009193_020 0.1878189251 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
15 Hb_004525_010 0.1884191201 - - late embryogenesis abundant, putative [Ricinus communis]
16 Hb_075050_010 0.1906305391 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_005210_010 0.1909676375 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
18 Hb_010407_090 0.1953854293 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
19 Hb_001006_160 0.1971871846 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_005276_080 0.1979523825 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000525_070 Hb_000525_070 Hb_003026_040 Hb_003026_040 Hb_000525_070--Hb_003026_040 Hb_011282_040 Hb_011282_040 Hb_000525_070--Hb_011282_040 Hb_000763_040 Hb_000763_040 Hb_000525_070--Hb_000763_040 Hb_001969_100 Hb_001969_100 Hb_000525_070--Hb_001969_100 Hb_000915_250 Hb_000915_250 Hb_000525_070--Hb_000915_250 Hb_001268_170 Hb_001268_170 Hb_000525_070--Hb_001268_170 Hb_003026_040--Hb_000763_040 Hb_003026_040--Hb_000915_250 Hb_003026_040--Hb_001969_100 Hb_000261_470 Hb_000261_470 Hb_003026_040--Hb_000261_470 Hb_011537_140 Hb_011537_140 Hb_003026_040--Hb_011537_140 Hb_011282_040--Hb_001268_170 Hb_000390_160 Hb_000390_160 Hb_011282_040--Hb_000390_160 Hb_001195_290 Hb_001195_290 Hb_011282_040--Hb_001195_290 Hb_001141_340 Hb_001141_340 Hb_011282_040--Hb_001141_340 Hb_002477_020 Hb_002477_020 Hb_011282_040--Hb_002477_020 Hb_005210_010 Hb_005210_010 Hb_011282_040--Hb_005210_010 Hb_000763_040--Hb_000915_250 Hb_004525_010 Hb_004525_010 Hb_000763_040--Hb_004525_010 Hb_000334_290 Hb_000334_290 Hb_000763_040--Hb_000334_290 Hb_000254_020 Hb_000254_020 Hb_000763_040--Hb_000254_020 Hb_000985_150 Hb_000985_150 Hb_000763_040--Hb_000985_150 Hb_001969_100--Hb_000261_470 Hb_001133_100 Hb_001133_100 Hb_001969_100--Hb_001133_100 Hb_010407_090 Hb_010407_090 Hb_001969_100--Hb_010407_090 Hb_006916_080 Hb_006916_080 Hb_001969_100--Hb_006916_080 Hb_000915_250--Hb_004525_010 Hb_004837_230 Hb_004837_230 Hb_000915_250--Hb_004837_230 Hb_009193_020 Hb_009193_020 Hb_000915_250--Hb_009193_020 Hb_000915_250--Hb_000254_020 Hb_000915_250--Hb_000334_290 Hb_001268_170--Hb_000390_160 Hb_001268_170--Hb_001195_290 Hb_001268_170--Hb_001141_340 Hb_001268_170--Hb_005210_010 Hb_002071_030 Hb_002071_030 Hb_001268_170--Hb_002071_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0517061 1.46108 0.354893 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.335339 0.0688194 0.0149649 2.75444

CAGE analysis