Hb_006916_080

Information

Type -
Description -
Location Contig6916: 104630-106934
Sequence    

Annotation

kegg
ID rcu:RCOM_0789890
description hypothetical protein
nr
ID XP_012088063.1
description PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JK01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25592 PE=4 SV=1
Gene Ontology
ID GO:0016021
description chaperone 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54421: 104638-106965 , PASA_asmbl_54422: 106156-106623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_080 0.0 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
2 Hb_000099_050 0.1303033732 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002307_190 0.1526734086 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
4 Hb_000393_040 0.1670806678 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
5 Hb_021531_010 0.1691938366 - - receptor-kinase, putative [Ricinus communis]
6 Hb_001969_100 0.1698184955 - - signal transducer, putative [Ricinus communis]
7 Hb_002485_050 0.1698598148 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
8 Hb_001268_170 0.1713338072 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
9 Hb_001623_380 0.1728279045 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
10 Hb_011282_040 0.1739737148 - - Sec14 cytosolic factor, putative [Ricinus communis]
11 Hb_003905_020 0.1763798735 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
12 Hb_009296_030 0.1767432969 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
13 Hb_015175_040 0.1793626778 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003605_060 0.1812348449 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
15 Hb_121089_010 0.1826508815 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
16 Hb_001133_100 0.1831835435 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
17 Hb_000302_230 0.1832409986 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005523_040 0.1837768958 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
19 Hb_000009_510 0.1845328641 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
20 Hb_000442_070 0.1846186582 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]

Gene co-expression network

sample Hb_006916_080 Hb_006916_080 Hb_000099_050 Hb_000099_050 Hb_006916_080--Hb_000099_050 Hb_002307_190 Hb_002307_190 Hb_006916_080--Hb_002307_190 Hb_000393_040 Hb_000393_040 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_001969_100 Hb_001969_100 Hb_006916_080--Hb_001969_100 Hb_002485_050 Hb_002485_050 Hb_006916_080--Hb_002485_050 Hb_003605_060 Hb_003605_060 Hb_000099_050--Hb_003605_060 Hb_000099_050--Hb_002485_050 Hb_002636_030 Hb_002636_030 Hb_000099_050--Hb_002636_030 Hb_121089_010 Hb_121089_010 Hb_000099_050--Hb_121089_010 Hb_015175_040 Hb_015175_040 Hb_000099_050--Hb_015175_040 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_137216_010 Hb_137216_010 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_003905_020 Hb_003905_020 Hb_002307_190--Hb_003905_020 Hb_000393_040--Hb_137216_010 Hb_000302_230 Hb_000302_230 Hb_000393_040--Hb_000302_230 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_005523_040 Hb_005523_040 Hb_021531_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_021531_010--Hb_000544_070 Hb_007597_030 Hb_007597_030 Hb_021531_010--Hb_007597_030 Hb_005210_010 Hb_005210_010 Hb_021531_010--Hb_005210_010 Hb_002475_060 Hb_002475_060 Hb_021531_010--Hb_002475_060 Hb_002249_090 Hb_002249_090 Hb_021531_010--Hb_002249_090 Hb_003026_040 Hb_003026_040 Hb_001969_100--Hb_003026_040 Hb_000261_470 Hb_000261_470 Hb_001969_100--Hb_000261_470 Hb_000525_070 Hb_000525_070 Hb_001969_100--Hb_000525_070 Hb_001133_100 Hb_001133_100 Hb_001969_100--Hb_001133_100 Hb_010407_090 Hb_010407_090 Hb_001969_100--Hb_010407_090 Hb_002485_050--Hb_003605_060 Hb_007803_040 Hb_007803_040 Hb_002485_050--Hb_007803_040 Hb_000856_280 Hb_000856_280 Hb_002485_050--Hb_000856_280 Hb_002485_050--Hb_000544_070 Hb_074548_010 Hb_074548_010 Hb_002485_050--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_002485_050--Hb_009393_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12907 1.93728 25.5113 4.99551 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50406 2.60184 0.176599 1.55639 35.6677

CAGE analysis