Hb_002475_060

Information

Type -
Description -
Location Contig2475: 60837-74907
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02430g
description Potassium channel SKOR family protein
nr
ID XP_012086443.1
description PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
swissprot
ID Q9M8S6
description Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1
trembl
ID A0A067K1Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22541 PE=4 SV=1
Gene Ontology
ID GO:0005249
description potassium channel skor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25735: 67020-74828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_060 0.0 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
2 Hb_001195_290 0.1109188233 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
3 Hb_021531_010 0.1155968624 - - receptor-kinase, putative [Ricinus communis]
4 Hb_000723_320 0.118015043 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
5 Hb_002235_070 0.1183628025 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
6 Hb_005523_040 0.1200385244 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
7 Hb_001946_120 0.1259150556 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
8 Hb_006970_030 0.1274367623 - - synaptotagmin, putative [Ricinus communis]
9 Hb_001541_280 0.1278731301 - - phosphate transporter [Manihot esculenta]
10 Hb_006472_040 0.1306965247 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
11 Hb_005694_120 0.13102817 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
12 Hb_000847_030 0.1314125784 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
13 Hb_022693_010 0.1327604476 - - pectin acetylesterase, putative [Ricinus communis]
14 Hb_008112_020 0.1337763087 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
15 Hb_000395_250 0.1351029907 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
16 Hb_000618_110 0.1356741681 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
17 Hb_000898_090 0.1367616724 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
18 Hb_001517_010 0.1378976399 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000856_280 0.1385834661 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
20 Hb_000679_320 0.1390139749 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]

Gene co-expression network

sample Hb_002475_060 Hb_002475_060 Hb_001195_290 Hb_001195_290 Hb_002475_060--Hb_001195_290 Hb_021531_010 Hb_021531_010 Hb_002475_060--Hb_021531_010 Hb_000723_320 Hb_000723_320 Hb_002475_060--Hb_000723_320 Hb_002235_070 Hb_002235_070 Hb_002475_060--Hb_002235_070 Hb_005523_040 Hb_005523_040 Hb_002475_060--Hb_005523_040 Hb_001946_120 Hb_001946_120 Hb_002475_060--Hb_001946_120 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_021531_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_021531_010--Hb_000544_070 Hb_007597_030 Hb_007597_030 Hb_021531_010--Hb_007597_030 Hb_021531_010--Hb_005210_010 Hb_002249_090 Hb_002249_090 Hb_021531_010--Hb_002249_090 Hb_000359_160 Hb_000359_160 Hb_000723_320--Hb_000359_160 Hb_010721_020 Hb_010721_020 Hb_000723_320--Hb_010721_020 Hb_003605_060 Hb_003605_060 Hb_000723_320--Hb_003605_060 Hb_000208_270 Hb_000208_270 Hb_000723_320--Hb_000208_270 Hb_009393_140 Hb_009393_140 Hb_000723_320--Hb_009393_140 Hb_000950_020 Hb_000950_020 Hb_002235_070--Hb_000950_020 Hb_000190_230 Hb_000190_230 Hb_002235_070--Hb_000190_230 Hb_003602_100 Hb_003602_100 Hb_002235_070--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_002235_070--Hb_007803_040 Hb_000049_100 Hb_000049_100 Hb_002235_070--Hb_000049_100 Hb_006970_030 Hb_006970_030 Hb_002235_070--Hb_006970_030 Hb_005523_040--Hb_001517_010 Hb_005523_040--Hb_005210_010 Hb_074548_010 Hb_074548_010 Hb_005523_040--Hb_074548_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_005523_040--Hb_001195_290 Hb_005694_120 Hb_005694_120 Hb_001946_120--Hb_005694_120 Hb_153258_040 Hb_153258_040 Hb_001946_120--Hb_153258_040 Hb_001007_070 Hb_001007_070 Hb_001946_120--Hb_001007_070 Hb_044478_010 Hb_044478_010 Hb_001946_120--Hb_044478_010 Hb_000984_160 Hb_000984_160 Hb_001946_120--Hb_000984_160 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200103 0.0466542 0.309533 0.227794 0.0161743 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0183373 0.0144292 0 0.0286567 0.674228

CAGE analysis