Hb_005694_120

Information

Type -
Description -
Location Contig5694: 80272-84969
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09740g
description POPTRDRAFT_731397; Calcium-transporting ATPase 2 family protein
nr
ID XP_012083146.1
description PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
swissprot
ID Q42883
description Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1
trembl
ID A0A067K9F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14220 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting endoplasmic reticulum-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49243: 80294-85088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_120 0.0 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
2 Hb_001946_120 0.0434200898 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
3 Hb_000847_030 0.0557929248 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
4 Hb_001007_070 0.0685422377 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
5 Hb_005111_040 0.0747492917 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_044478_010 0.078306901 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
7 Hb_000984_160 0.0811426286 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
8 Hb_153258_040 0.0832412514 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
9 Hb_001999_230 0.0839160818 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
10 Hb_002259_090 0.0843931335 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
11 Hb_005569_010 0.0847673772 - - Heme-binding protein, putative [Ricinus communis]
12 Hb_004835_020 0.085740968 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_011214_130 0.0865772766 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
14 Hb_004128_170 0.0871323324 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
15 Hb_033363_040 0.0881940089 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
16 Hb_000099_120 0.0886688022 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_004052_030 0.0920056834 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
18 Hb_003025_160 0.0922962255 - - Protein HVA22, putative [Ricinus communis]
19 Hb_001141_100 0.094077479 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
20 Hb_009193_070 0.0951506685 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_005694_120 Hb_005694_120 Hb_001946_120 Hb_001946_120 Hb_005694_120--Hb_001946_120 Hb_000847_030 Hb_000847_030 Hb_005694_120--Hb_000847_030 Hb_001007_070 Hb_001007_070 Hb_005694_120--Hb_001007_070 Hb_005111_040 Hb_005111_040 Hb_005694_120--Hb_005111_040 Hb_044478_010 Hb_044478_010 Hb_005694_120--Hb_044478_010 Hb_000984_160 Hb_000984_160 Hb_005694_120--Hb_000984_160 Hb_153258_040 Hb_153258_040 Hb_001946_120--Hb_153258_040 Hb_001946_120--Hb_001007_070 Hb_001946_120--Hb_044478_010 Hb_001946_120--Hb_000984_160 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120 Hb_003018_150 Hb_003018_150 Hb_000847_030--Hb_003018_150 Hb_000618_110 Hb_000618_110 Hb_000847_030--Hb_000618_110 Hb_000847_030--Hb_000984_160 Hb_000847_030--Hb_001946_120 Hb_001210_060 Hb_001210_060 Hb_000847_030--Hb_001210_060 Hb_001999_230 Hb_001999_230 Hb_001007_070--Hb_001999_230 Hb_001007_070--Hb_000099_120 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_006291_050 Hb_006291_050 Hb_005111_040--Hb_006291_050 Hb_000482_180 Hb_000482_180 Hb_005111_040--Hb_000482_180 Hb_005111_040--Hb_001007_070 Hb_005111_040--Hb_009193_070 Hb_131466_010 Hb_131466_010 Hb_005111_040--Hb_131466_010 Hb_005111_040--Hb_044478_010 Hb_044478_010--Hb_153258_040 Hb_002042_210 Hb_002042_210 Hb_044478_010--Hb_002042_210 Hb_044478_010--Hb_131466_010 Hb_044478_010--Hb_001999_230 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_131876_010 Hb_131876_010 Hb_000984_160--Hb_131876_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_069696_020 Hb_069696_020 Hb_000984_160--Hb_069696_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0223159 2.45702 12.0905 11.1536 0.126964 0.112061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151734 0.129357 0.0381464 0.855817 27.1075

CAGE analysis