Hb_001969_100

Information

Type -
Description -
Location Contig1969: 141993-144354
Sequence    

Annotation

kegg
ID rcu:RCOM_0896900
description signal transducer, putative
nr
ID XP_002517554.1
description signal transducer, putative [Ricinus communis]
swissprot
ID Q5KS50
description Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1
trembl
ID B9RUY5
description Signal transducer, putative OS=Ricinus communis GN=RCOM_0896900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19741: 142090-144345 , PASA_asmbl_19742: 142883-143324
cDNA
(Sanger)
(ID:Location)		 039_K24.ab1: 142090-143674 , 051_D14.ab1: 142090-142860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_100 0.0 - - signal transducer, putative [Ricinus communis]
2 Hb_003026_040 0.1500440517 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
3 Hb_000261_470 0.1528746058 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
4 Hb_000525_070 0.160209713 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
5 Hb_001133_100 0.1622626141 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
6 Hb_010407_090 0.1641611748 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
7 Hb_006916_080 0.1698184955 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
8 Hb_000763_040 0.1819284036 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_002307_190 0.1826741873 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
10 Hb_006198_030 0.186392516 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011537_140 0.1883893938 - - hypothetical protein POPTR_0001s05320g [Populus trichocarpa]
12 Hb_000367_230 0.1886722036 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_000174_080 0.1897002988 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
14 Hb_000915_250 0.1902400906 - - chloroplast latex aldolase-like protein [Manihot esculenta]
15 Hb_001268_170 0.1919645163 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
16 Hb_107647_010 0.1935175474 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
17 Hb_011282_040 0.1939526744 - - Sec14 cytosolic factor, putative [Ricinus communis]
18 Hb_002071_030 0.1941613102 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
19 Hb_002006_050 0.1969023011 - - actin binding protein, putative [Ricinus communis]
20 Hb_002249_090 0.1982057757 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001969_100 Hb_001969_100 Hb_003026_040 Hb_003026_040 Hb_001969_100--Hb_003026_040 Hb_000261_470 Hb_000261_470 Hb_001969_100--Hb_000261_470 Hb_000525_070 Hb_000525_070 Hb_001969_100--Hb_000525_070 Hb_001133_100 Hb_001133_100 Hb_001969_100--Hb_001133_100 Hb_010407_090 Hb_010407_090 Hb_001969_100--Hb_010407_090 Hb_006916_080 Hb_006916_080 Hb_001969_100--Hb_006916_080 Hb_000763_040 Hb_000763_040 Hb_003026_040--Hb_000763_040 Hb_003026_040--Hb_000525_070 Hb_000915_250 Hb_000915_250 Hb_003026_040--Hb_000915_250 Hb_003026_040--Hb_000261_470 Hb_011537_140 Hb_011537_140 Hb_003026_040--Hb_011537_140 Hb_000261_470--Hb_011537_140 Hb_000367_230 Hb_000367_230 Hb_000261_470--Hb_000367_230 Hb_020805_050 Hb_020805_050 Hb_000261_470--Hb_020805_050 Hb_007101_120 Hb_007101_120 Hb_000261_470--Hb_007101_120 Hb_004837_230 Hb_004837_230 Hb_000261_470--Hb_004837_230 Hb_001287_020 Hb_001287_020 Hb_000261_470--Hb_001287_020 Hb_011282_040 Hb_011282_040 Hb_000525_070--Hb_011282_040 Hb_000525_070--Hb_000763_040 Hb_000525_070--Hb_000915_250 Hb_001268_170 Hb_001268_170 Hb_000525_070--Hb_001268_170 Hb_000442_070 Hb_000442_070 Hb_001133_100--Hb_000442_070 Hb_007044_250 Hb_007044_250 Hb_001133_100--Hb_007044_250 Hb_001405_090 Hb_001405_090 Hb_001133_100--Hb_001405_090 Hb_003106_170 Hb_003106_170 Hb_001133_100--Hb_003106_170 Hb_007694_060 Hb_007694_060 Hb_001133_100--Hb_007694_060 Hb_000977_270 Hb_000977_270 Hb_001133_100--Hb_000977_270 Hb_107647_010 Hb_107647_010 Hb_010407_090--Hb_107647_010 Hb_002249_090 Hb_002249_090 Hb_010407_090--Hb_002249_090 Hb_002609_140 Hb_002609_140 Hb_010407_090--Hb_002609_140 Hb_002006_050 Hb_002006_050 Hb_010407_090--Hb_002006_050 Hb_000174_080 Hb_000174_080 Hb_010407_090--Hb_000174_080 Hb_010407_090--Hb_000261_470 Hb_000099_050 Hb_000099_050 Hb_006916_080--Hb_000099_050 Hb_002307_190 Hb_002307_190 Hb_006916_080--Hb_002307_190 Hb_000393_040 Hb_000393_040 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_002485_050 Hb_002485_050 Hb_006916_080--Hb_002485_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198004 1.1704 74.7283 5.47408 0.232422 0.220683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33462 10.3759 3.86159 1.01385 113.965

CAGE analysis