Hb_000915_250

Information

Type -
Description -
Location Contig915: 235147-236475
Sequence    

Annotation

kegg
ID rcu:RCOM_0291680
description fructose-bisphosphate aldolase, putative (EC:4.1.2.13)
nr
ID AAV74407.1
description chloroplast latex aldolase-like protein [Manihot esculenta]
swissprot
ID Q9SJU4
description Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2
trembl
ID Q5PYQ2
description Fructose-bisphosphate aldolase (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0003824
description probable fructose-bisphosphate aldolase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62237: 235205-235906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_250 0.0 - - chloroplast latex aldolase-like protein [Manihot esculenta]
2 Hb_000763_040 0.0718199842 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_004525_010 0.0849784381 - - late embryogenesis abundant, putative [Ricinus communis]
4 Hb_004837_230 0.0986383392 - - unknown [Populus trichocarpa]
5 Hb_009193_020 0.0988600164 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
6 Hb_000254_020 0.1016297581 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
7 Hb_000334_290 0.1021834923 - - monovalent cation:proton antiporter, putative [Ricinus communis]
8 Hb_005605_010 0.1028007133 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
9 Hb_000625_080 0.1036117283 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
10 Hb_000482_170 0.1043500793 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
11 Hb_000985_150 0.1045678474 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
12 Hb_020805_050 0.1046335207 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
13 Hb_005245_110 0.1071341953 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
14 Hb_000948_240 0.1079936885 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001006_160 0.1080535288 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_008484_080 0.1104662612 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
17 Hb_006665_020 0.1115512644 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
18 Hb_000191_090 0.111950647 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
19 Hb_006901_010 0.113198488 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
20 Hb_099182_010 0.1133453633 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]

Gene co-expression network

sample Hb_000915_250 Hb_000915_250 Hb_000763_040 Hb_000763_040 Hb_000915_250--Hb_000763_040 Hb_004525_010 Hb_004525_010 Hb_000915_250--Hb_004525_010 Hb_004837_230 Hb_004837_230 Hb_000915_250--Hb_004837_230 Hb_009193_020 Hb_009193_020 Hb_000915_250--Hb_009193_020 Hb_000254_020 Hb_000254_020 Hb_000915_250--Hb_000254_020 Hb_000334_290 Hb_000334_290 Hb_000915_250--Hb_000334_290 Hb_003026_040 Hb_003026_040 Hb_000763_040--Hb_003026_040 Hb_000763_040--Hb_004525_010 Hb_000763_040--Hb_000334_290 Hb_000763_040--Hb_000254_020 Hb_000985_150 Hb_000985_150 Hb_000763_040--Hb_000985_150 Hb_004525_010--Hb_000334_290 Hb_002893_200 Hb_002893_200 Hb_004525_010--Hb_002893_200 Hb_004525_010--Hb_004837_230 Hb_004525_010--Hb_000985_150 Hb_107748_010 Hb_107748_010 Hb_004525_010--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_004525_010--Hb_006901_010 Hb_005605_010 Hb_005605_010 Hb_004837_230--Hb_005605_010 Hb_005245_110 Hb_005245_110 Hb_004837_230--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_004837_230--Hb_000083_020 Hb_007101_120 Hb_007101_120 Hb_004837_230--Hb_007101_120 Hb_000482_170 Hb_000482_170 Hb_004837_230--Hb_000482_170 Hb_000625_080 Hb_000625_080 Hb_009193_020--Hb_000625_080 Hb_005276_080 Hb_005276_080 Hb_009193_020--Hb_005276_080 Hb_000676_320 Hb_000676_320 Hb_009193_020--Hb_000676_320 Hb_013726_060 Hb_013726_060 Hb_009193_020--Hb_013726_060 Hb_000510_180 Hb_000510_180 Hb_009193_020--Hb_000510_180 Hb_001717_060 Hb_001717_060 Hb_009193_020--Hb_001717_060 Hb_000254_020--Hb_107748_010 Hb_005375_090 Hb_005375_090 Hb_000254_020--Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_000254_020--Hb_003747_090 Hb_001006_160 Hb_001006_160 Hb_000254_020--Hb_001006_160 Hb_002785_040 Hb_002785_040 Hb_000254_020--Hb_002785_040 Hb_000254_020--Hb_004525_010 Hb_000334_290--Hb_000985_150 Hb_002014_140 Hb_002014_140 Hb_000334_290--Hb_002014_140 Hb_000334_290--Hb_006901_010 Hb_000334_290--Hb_002893_200 Hb_082402_020 Hb_082402_020 Hb_000334_290--Hb_082402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0280518 0.0282935 3.78676 0.534968 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.152135 0 0 5.41335

CAGE analysis