Hb_000625_080

Information

Type -
Description -
Location Contig625: 65824-68424
Sequence    

Annotation

kegg
ID gmx:100802032
description ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like
nr
ID XP_012065965.1
description PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
swissprot
ID P10933
description Ferredoxin--NADP reductase, leaf isozyme, chloroplastic OS=Pisum sativum GN=PETH PE=1 SV=1
trembl
ID A0A067LHF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06551 PE=4 SV=1
Gene Ontology
ID GO:0009534
description ferredoxin--nadp leaf chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51638: 66792-68579
cDNA
(Sanger)
(ID:Location)		 020_J08.ab1: 66792-68410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_080 0.0 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
2 Hb_000510_180 0.0449386838 - - unknown [Lotus japonicus]
3 Hb_009193_020 0.0538133607 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
4 Hb_008013_020 0.0590553451 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
5 Hb_001717_060 0.0623813084 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
6 Hb_000977_250 0.0624480941 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_006573_110 0.0631941765 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
8 Hb_005618_030 0.0655722349 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
9 Hb_000937_010 0.0658706997 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002818_110 0.0692203885 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
11 Hb_013726_060 0.0704269296 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
12 Hb_023313_050 0.0733353659 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
13 Hb_005754_050 0.073375342 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
14 Hb_002434_040 0.0746293121 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
15 Hb_000053_010 0.0759411001 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
16 Hb_001170_020 0.0761396342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008484_080 0.0765064195 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
18 Hb_007101_120 0.0768672723 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
19 Hb_003050_380 0.0778346361 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
20 Hb_020805_050 0.0782928329 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000625_080 Hb_000625_080 Hb_000510_180 Hb_000510_180 Hb_000625_080--Hb_000510_180 Hb_009193_020 Hb_009193_020 Hb_000625_080--Hb_009193_020 Hb_008013_020 Hb_008013_020 Hb_000625_080--Hb_008013_020 Hb_001717_060 Hb_001717_060 Hb_000625_080--Hb_001717_060 Hb_000977_250 Hb_000977_250 Hb_000625_080--Hb_000977_250 Hb_006573_110 Hb_006573_110 Hb_000625_080--Hb_006573_110 Hb_013726_060 Hb_013726_060 Hb_000510_180--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_000510_180--Hb_002818_110 Hb_000510_180--Hb_008013_020 Hb_000510_180--Hb_006573_110 Hb_000510_180--Hb_009193_020 Hb_005276_080 Hb_005276_080 Hb_009193_020--Hb_005276_080 Hb_000676_320 Hb_000676_320 Hb_009193_020--Hb_000676_320 Hb_009193_020--Hb_013726_060 Hb_009193_020--Hb_001717_060 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_000262_090 Hb_000262_090 Hb_008013_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_008013_020--Hb_000821_030 Hb_008013_020--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_008013_020--Hb_000210_030 Hb_003038_060 Hb_003038_060 Hb_001717_060--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_001717_060--Hb_005754_050 Hb_000531_100 Hb_000531_100 Hb_001717_060--Hb_000531_100 Hb_005280_020 Hb_005280_020 Hb_001717_060--Hb_005280_020 Hb_001717_060--Hb_013726_060 Hb_001717_060--Hb_002818_110 Hb_002434_040 Hb_002434_040 Hb_000977_250--Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_000977_250--Hb_000053_010 Hb_023313_050 Hb_023313_050 Hb_000977_250--Hb_023313_050 Hb_001170_020 Hb_001170_020 Hb_000977_250--Hb_001170_020 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_014361_160 Hb_014361_160 Hb_000977_250--Hb_014361_160 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_002818_110 Hb_006573_110--Hb_000262_090 Hb_006573_110--Hb_000210_030 Hb_006573_110--Hb_000821_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111492 6.7934 1.23858 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0325623 0 0.0130482 7.60777

CAGE analysis