Hb_014361_160

Information

Type transcription factor
Description TF Family: GRAS
Location Contig14361: 134310-135695
Sequence    

Annotation

kegg
ID tcc:TCM_000764
description SCL domain class transcription factor
nr
ID XP_007047483.1
description SCL domain class transcription factor [Theobroma cacao]
swissprot
ID Q9SN22
description Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1
trembl
ID A0A061DGZ9
description SCL domain class transcription factor OS=Theobroma cacao GN=TCM_000764 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11469: 134283-134577 , PASA_asmbl_11471: 135380-135618 , PASA_asmbl_11472: 136016-136152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_160 0.0 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
2 Hb_171810_030 0.0161279336 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
3 Hb_011433_010 0.0192634706 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
4 Hb_000053_010 0.0243428912 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
5 Hb_002434_040 0.0266630302 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
6 Hb_003392_060 0.0277866719 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
7 Hb_023313_050 0.03159643 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
8 Hb_005797_020 0.0367288417 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
9 Hb_040323_010 0.0382366135 - - -
10 Hb_000977_250 0.0425634272 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_003605_170 0.0457979741 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
12 Hb_015807_120 0.0487376526 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
13 Hb_000414_040 0.0507034198 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_003836_040 0.0515236354 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
15 Hb_004724_440 0.052214277 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000210_020 0.0532724286 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
17 Hb_071557_010 0.054011518 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
18 Hb_000174_120 0.0594258466 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_099182_010 0.0599665302 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
20 Hb_001170_020 0.0658486705 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_014361_160 Hb_014361_160 Hb_171810_030 Hb_171810_030 Hb_014361_160--Hb_171810_030 Hb_011433_010 Hb_011433_010 Hb_014361_160--Hb_011433_010 Hb_000053_010 Hb_000053_010 Hb_014361_160--Hb_000053_010 Hb_002434_040 Hb_002434_040 Hb_014361_160--Hb_002434_040 Hb_003392_060 Hb_003392_060 Hb_014361_160--Hb_003392_060 Hb_023313_050 Hb_023313_050 Hb_014361_160--Hb_023313_050 Hb_040323_010 Hb_040323_010 Hb_171810_030--Hb_040323_010 Hb_171810_030--Hb_002434_040 Hb_171810_030--Hb_003392_060 Hb_171810_030--Hb_000053_010 Hb_171810_030--Hb_023313_050 Hb_005797_020 Hb_005797_020 Hb_011433_010--Hb_005797_020 Hb_011433_010--Hb_003392_060 Hb_000414_040 Hb_000414_040 Hb_011433_010--Hb_000414_040 Hb_011433_010--Hb_171810_030 Hb_011433_010--Hb_000053_010 Hb_000053_010--Hb_002434_040 Hb_000053_010--Hb_023313_050 Hb_000977_250 Hb_000977_250 Hb_000053_010--Hb_000977_250 Hb_002434_040--Hb_023313_050 Hb_002434_040--Hb_000977_250 Hb_002434_040--Hb_040323_010 Hb_071557_010 Hb_071557_010 Hb_003392_060--Hb_071557_010 Hb_015807_120 Hb_015807_120 Hb_003392_060--Hb_015807_120 Hb_000740_010 Hb_000740_010 Hb_003392_060--Hb_000740_010 Hb_023313_050--Hb_000977_250 Hb_099182_010 Hb_099182_010 Hb_023313_050--Hb_099182_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.02361 0.151455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.898069

CAGE analysis