Hb_015807_120

Information

Type -
Description -
Location Contig15807: 110548-111604
Sequence    

Annotation

kegg
ID rcu:RCOM_0181530
description Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative
nr
ID XP_012070720.1
description PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9SGH4
description Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana GN=PNSL3 PE=1 SV=1
trembl
ID A0A067KS41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00798 PE=4 SV=1
Gene Ontology
ID GO:0009344
description psbq-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13903: 110578-111576 , PASA_asmbl_13904: 110744-110985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015807_120 0.0 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
2 Hb_003392_060 0.0328179552 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
3 Hb_071557_010 0.034864338 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
4 Hb_004235_070 0.0388332494 - - acyl carrier protein, putative [Ricinus communis]
5 Hb_000740_010 0.0417237202 - - cytochrome P450, putative [Ricinus communis]
6 Hb_011433_010 0.0426682524 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
7 Hb_001638_060 0.0460209927 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
8 Hb_000414_040 0.0475668575 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
9 Hb_006261_020 0.0486991999 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
10 Hb_014361_160 0.0487376526 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_005797_020 0.0497379782 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
12 Hb_171810_030 0.0525546648 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
13 Hb_096267_010 0.0528355775 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
14 Hb_000821_030 0.0572249479 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
15 Hb_099335_010 0.0582348455 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
16 Hb_000011_510 0.0588966869 - - Esterase precursor, putative [Ricinus communis]
17 Hb_000174_120 0.059346141 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_004724_440 0.0598776348 - - conserved hypothetical protein [Ricinus communis]
19 Hb_048476_090 0.0613246103 - - conserved hypothetical protein [Ricinus communis]
20 Hb_040323_010 0.0666851362 - - -

Gene co-expression network

sample Hb_015807_120 Hb_015807_120 Hb_003392_060 Hb_003392_060 Hb_015807_120--Hb_003392_060 Hb_071557_010 Hb_071557_010 Hb_015807_120--Hb_071557_010 Hb_004235_070 Hb_004235_070 Hb_015807_120--Hb_004235_070 Hb_000740_010 Hb_000740_010 Hb_015807_120--Hb_000740_010 Hb_011433_010 Hb_011433_010 Hb_015807_120--Hb_011433_010 Hb_001638_060 Hb_001638_060 Hb_015807_120--Hb_001638_060 Hb_003392_060--Hb_071557_010 Hb_003392_060--Hb_011433_010 Hb_014361_160 Hb_014361_160 Hb_003392_060--Hb_014361_160 Hb_171810_030 Hb_171810_030 Hb_003392_060--Hb_171810_030 Hb_003392_060--Hb_000740_010 Hb_071557_010--Hb_000740_010 Hb_099335_010 Hb_099335_010 Hb_071557_010--Hb_099335_010 Hb_048476_090 Hb_048476_090 Hb_071557_010--Hb_048476_090 Hb_000011_510 Hb_000011_510 Hb_071557_010--Hb_000011_510 Hb_006261_020 Hb_006261_020 Hb_004235_070--Hb_006261_020 Hb_004235_070--Hb_000740_010 Hb_004235_070--Hb_071557_010 Hb_004235_070--Hb_001638_060 Hb_002006_080 Hb_002006_080 Hb_004235_070--Hb_002006_080 Hb_000740_010--Hb_048476_090 Hb_000740_010--Hb_099335_010 Hb_005797_020 Hb_005797_020 Hb_011433_010--Hb_005797_020 Hb_011433_010--Hb_014361_160 Hb_000414_040 Hb_000414_040 Hb_011433_010--Hb_000414_040 Hb_011433_010--Hb_171810_030 Hb_000053_010 Hb_000053_010 Hb_011433_010--Hb_000053_010 Hb_001638_060--Hb_006261_020 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_001638_060--Hb_000030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108802 32.6455 4.0381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 23.8826

CAGE analysis