Hb_000254_020

Information

Type -
Description -
Location Contig254: 44484-48516
Sequence    

Annotation

kegg
ID cic:CICLE_v10025247mg
description hypothetical protein
nr
ID KDO56892.1
description hypothetical protein CISIN_1g007892mg [Citrus sinensis]
swissprot
ID Q8GX23
description Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1
trembl
ID A0A067F068
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007892mg PE=3 SV=1
Gene Ontology
ID GO:0005622
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26519: 7922-48247 , PASA_asmbl_26522: 7922-46995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_020 0.0 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
2 Hb_107748_010 0.0663818166 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
3 Hb_005375_090 0.0715518458 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
4 Hb_003747_090 0.0715804268 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_001006_160 0.0735763626 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_002785_040 0.0738634084 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
7 Hb_004525_010 0.0749378205 - - late embryogenesis abundant, putative [Ricinus communis]
8 Hb_005605_020 0.0781522848 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_086022_020 0.0807225943 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
10 Hb_004129_170 0.0837451685 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
11 Hb_002890_170 0.0838869109 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
12 Hb_176135_010 0.0844219859 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_082402_020 0.0845948696 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
14 Hb_000334_290 0.0847036372 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_000640_090 0.0847996477 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
16 Hb_001621_090 0.0851361296 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
17 Hb_008748_050 0.0851389937 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
18 Hb_000805_080 0.0851800512 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
19 Hb_013405_110 0.0861548552 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_004048_080 0.0863341098 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]

Gene co-expression network

sample Hb_000254_020 Hb_000254_020 Hb_107748_010 Hb_107748_010 Hb_000254_020--Hb_107748_010 Hb_005375_090 Hb_005375_090 Hb_000254_020--Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_000254_020--Hb_003747_090 Hb_001006_160 Hb_001006_160 Hb_000254_020--Hb_001006_160 Hb_002785_040 Hb_002785_040 Hb_000254_020--Hb_002785_040 Hb_004525_010 Hb_004525_010 Hb_000254_020--Hb_004525_010 Hb_000640_090 Hb_000640_090 Hb_107748_010--Hb_000640_090 Hb_005605_020 Hb_005605_020 Hb_107748_010--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_107748_010--Hb_001046_060 Hb_002893_200 Hb_002893_200 Hb_107748_010--Hb_002893_200 Hb_000805_080 Hb_000805_080 Hb_107748_010--Hb_000805_080 Hb_001104_080 Hb_001104_080 Hb_107748_010--Hb_001104_080 Hb_005375_090--Hb_003747_090 Hb_005375_090--Hb_002785_040 Hb_013405_110 Hb_013405_110 Hb_005375_090--Hb_013405_110 Hb_002890_170 Hb_002890_170 Hb_005375_090--Hb_002890_170 Hb_004129_170 Hb_004129_170 Hb_005375_090--Hb_004129_170 Hb_082402_020 Hb_082402_020 Hb_005375_090--Hb_082402_020 Hb_003747_090--Hb_002785_040 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_003747_090--Hb_002890_170 Hb_003747_090--Hb_082402_020 Hb_005276_080 Hb_005276_080 Hb_001006_160--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_001006_160--Hb_006665_020 Hb_001006_160--Hb_002785_040 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_000083_180 Hb_000083_180 Hb_001006_160--Hb_000083_180 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_000334_290 Hb_000334_290 Hb_004525_010--Hb_000334_290 Hb_004525_010--Hb_002893_200 Hb_004837_230 Hb_004837_230 Hb_004525_010--Hb_004837_230 Hb_000985_150 Hb_000985_150 Hb_004525_010--Hb_000985_150 Hb_004525_010--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_004525_010--Hb_006901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.028734 1.73665 0.432644 0.0108812 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0388777 0 0 3.60609

CAGE analysis