Hb_011537_140

Information

Type -
Description -
Location Contig11537: 145584-151163
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05320g
description POPTRDRAFT_750772; hypothetical protein
nr
ID XP_002297796.2
description hypothetical protein POPTR_0001s05320g [Populus trichocarpa]
swissprot
ID O24370
description Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1
trembl
ID B9GMA4
description Lipoxygenase OS=Populus trichocarpa GN=POPTR_0001s05320g PE=3 SV=2
Gene Ontology
ID GO:0005515
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04670: 145741-151007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_140 0.0 - - hypothetical protein POPTR_0001s05320g [Populus trichocarpa]
2 Hb_000261_470 0.0620095983 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
3 Hb_007101_120 0.1027277861 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
4 Hb_000003_490 0.10281296 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
5 Hb_004837_230 0.108815396 - - unknown [Populus trichocarpa]
6 Hb_000191_090 0.1111105148 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
7 Hb_020805_050 0.1131029575 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
8 Hb_003921_010 0.1146831889 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008484_080 0.1156707561 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
10 Hb_004724_440 0.1181141116 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005245_110 0.1195677175 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
12 Hb_040323_010 0.1220491329 - - -
13 Hb_099182_010 0.1221042196 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
14 Hb_001823_010 0.1244546023 - - PREDICTED: ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
15 Hb_096267_010 0.1258566034 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
16 Hb_006555_020 0.1279409473 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
17 Hb_005618_030 0.1284250317 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
18 Hb_000482_170 0.1284621598 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
19 Hb_000985_150 0.1292231431 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
20 Hb_000011_510 0.1308213164 - - Esterase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011537_140 Hb_011537_140 Hb_000261_470 Hb_000261_470 Hb_011537_140--Hb_000261_470 Hb_007101_120 Hb_007101_120 Hb_011537_140--Hb_007101_120 Hb_000003_490 Hb_000003_490 Hb_011537_140--Hb_000003_490 Hb_004837_230 Hb_004837_230 Hb_011537_140--Hb_004837_230 Hb_000191_090 Hb_000191_090 Hb_011537_140--Hb_000191_090 Hb_020805_050 Hb_020805_050 Hb_011537_140--Hb_020805_050 Hb_000367_230 Hb_000367_230 Hb_000261_470--Hb_000367_230 Hb_000261_470--Hb_020805_050 Hb_000261_470--Hb_007101_120 Hb_000261_470--Hb_004837_230 Hb_001287_020 Hb_001287_020 Hb_000261_470--Hb_001287_020 Hb_007101_120--Hb_020805_050 Hb_007101_120--Hb_004837_230 Hb_007101_120--Hb_000191_090 Hb_005245_110 Hb_005245_110 Hb_007101_120--Hb_005245_110 Hb_008484_080 Hb_008484_080 Hb_007101_120--Hb_008484_080 Hb_005618_030 Hb_005618_030 Hb_007101_120--Hb_005618_030 Hb_001823_010 Hb_001823_010 Hb_000003_490--Hb_001823_010 Hb_000003_490--Hb_000191_090 Hb_003921_010 Hb_003921_010 Hb_000003_490--Hb_003921_010 Hb_000003_490--Hb_005245_110 Hb_099182_010 Hb_099182_010 Hb_000003_490--Hb_099182_010 Hb_000482_170 Hb_000482_170 Hb_000003_490--Hb_000482_170 Hb_005605_010 Hb_005605_010 Hb_004837_230--Hb_005605_010 Hb_004837_230--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_004837_230--Hb_000482_170 Hb_000191_090--Hb_099182_010 Hb_040323_010 Hb_040323_010 Hb_000191_090--Hb_040323_010 Hb_004724_440 Hb_004724_440 Hb_000191_090--Hb_004724_440 Hb_000191_090--Hb_008484_080 Hb_171810_030 Hb_171810_030 Hb_000191_090--Hb_171810_030 Hb_023313_050 Hb_023313_050 Hb_000191_090--Hb_023313_050 Hb_020805_050--Hb_004837_230 Hb_020805_050--Hb_008484_080 Hb_000625_080 Hb_000625_080 Hb_020805_050--Hb_000625_080 Hb_006665_020 Hb_006665_020 Hb_020805_050--Hb_006665_020 Hb_020805_050--Hb_000191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.370966 0.233369 122.388 6.59634 0.234854 0.146545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.89656 0.42332 2.97149 0.236718 131.793

CAGE analysis