Hb_020805_050

Information

Type -
Description -
Location Contig20805: 40399-46404
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00800g
description POPTRDRAFT_851312; hypothetical protein
nr
ID XP_012073856.1
description PREDICTED: MLO-like protein 9 [Jatropha curcas]
swissprot
ID O22815
description MLO-like protein 5 OS=Arabidopsis thaliana GN=MLO5 PE=2 SV=1
trembl
ID B9GPQ2
description MLO-like protein OS=Populus trichocarpa GN=MLO PE=3 SV=2
Gene Ontology
ID GO:0016021
description mlo-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21516: 40440-42553 , PASA_asmbl_21517: 41218-41496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_050 0.0 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
2 Hb_007101_120 0.0565661136 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
3 Hb_004837_230 0.0660723687 - - unknown [Populus trichocarpa]
4 Hb_008484_080 0.0771833893 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
5 Hb_000625_080 0.0782928329 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
6 Hb_006665_020 0.0813430371 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_000191_090 0.0815935041 transcription factor TF Family: MYB GHMYB10, putative [Theobroma cacao]
8 Hb_005245_110 0.0822153141 - - hypothetical protein CISIN_1g0225141mg [Citrus sinensis]
9 Hb_005618_030 0.0829086096 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
10 Hb_000937_010 0.0830584034 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000985_150 0.0853942626 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
12 Hb_009193_020 0.0854373143 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
13 Hb_005276_080 0.085830743 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
14 Hb_001287_020 0.086121553 - - SulA [Manihot esculenta]
15 Hb_005605_010 0.0874366548 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
16 Hb_003921_010 0.0888680125 - - conserved hypothetical protein [Ricinus communis]
17 Hb_099182_010 0.0900478419 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
18 Hb_000115_020 0.0911427785 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
19 Hb_001006_160 0.0923950158 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_001717_060 0.09258789 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]

Gene co-expression network

sample Hb_020805_050 Hb_020805_050 Hb_007101_120 Hb_007101_120 Hb_020805_050--Hb_007101_120 Hb_004837_230 Hb_004837_230 Hb_020805_050--Hb_004837_230 Hb_008484_080 Hb_008484_080 Hb_020805_050--Hb_008484_080 Hb_000625_080 Hb_000625_080 Hb_020805_050--Hb_000625_080 Hb_006665_020 Hb_006665_020 Hb_020805_050--Hb_006665_020 Hb_000191_090 Hb_000191_090 Hb_020805_050--Hb_000191_090 Hb_007101_120--Hb_004837_230 Hb_007101_120--Hb_000191_090 Hb_005245_110 Hb_005245_110 Hb_007101_120--Hb_005245_110 Hb_007101_120--Hb_008484_080 Hb_005618_030 Hb_005618_030 Hb_007101_120--Hb_005618_030 Hb_005605_010 Hb_005605_010 Hb_004837_230--Hb_005605_010 Hb_004837_230--Hb_005245_110 Hb_000083_020 Hb_000083_020 Hb_004837_230--Hb_000083_020 Hb_004525_010 Hb_004525_010 Hb_004837_230--Hb_004525_010 Hb_000482_170 Hb_000482_170 Hb_004837_230--Hb_000482_170 Hb_099182_010 Hb_099182_010 Hb_008484_080--Hb_099182_010 Hb_023313_050 Hb_023313_050 Hb_008484_080--Hb_023313_050 Hb_008484_080--Hb_000191_090 Hb_040323_010 Hb_040323_010 Hb_008484_080--Hb_040323_010 Hb_002434_040 Hb_002434_040 Hb_008484_080--Hb_002434_040 Hb_000977_250 Hb_000977_250 Hb_008484_080--Hb_000977_250 Hb_000510_180 Hb_000510_180 Hb_000625_080--Hb_000510_180 Hb_009193_020 Hb_009193_020 Hb_000625_080--Hb_009193_020 Hb_008013_020 Hb_008013_020 Hb_000625_080--Hb_008013_020 Hb_001717_060 Hb_001717_060 Hb_000625_080--Hb_001717_060 Hb_000625_080--Hb_000977_250 Hb_006573_110 Hb_006573_110 Hb_000625_080--Hb_006573_110 Hb_001621_090 Hb_001621_090 Hb_006665_020--Hb_001621_090 Hb_005276_080 Hb_005276_080 Hb_006665_020--Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_006665_020--Hb_001006_160 Hb_006665_020--Hb_005605_010 Hb_000450_050 Hb_000450_050 Hb_006665_020--Hb_000450_050 Hb_006665_020--Hb_004837_230 Hb_000191_090--Hb_099182_010 Hb_000191_090--Hb_040323_010 Hb_004724_440 Hb_004724_440 Hb_000191_090--Hb_004724_440 Hb_171810_030 Hb_171810_030 Hb_000191_090--Hb_171810_030 Hb_000191_090--Hb_023313_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0407125 0.173989 11.0555 1.39168 0.022327 0.0399225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0506098 0.0132749 0 0.0632389 13.9243

CAGE analysis