Hb_000367_230

Information

Type transcription factor
Description TF Family: bHLH
Location Contig367: 190082-192757
Sequence    

Annotation

kegg
ID rcu:RCOM_1470600
description DNA binding protein, putative
nr
ID XP_002514702.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GZ38
description Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1
trembl
ID B9RLT3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1470600 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor pif7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37752: 189324-189639 , PASA_asmbl_37753: 190149-191281 , PASA_asmbl_37754: 191289-192904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_230 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_000261_470 0.1182675076 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
3 Hb_011537_140 0.1504688583 - - hypothetical protein POPTR_0001s05320g [Populus trichocarpa]
4 Hb_180985_010 0.1712426226 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
5 Hb_000393_040 0.1720724405 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
6 Hb_002307_190 0.1724344906 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
7 Hb_000648_070 0.1746606978 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
8 Hb_001287_020 0.1759387085 - - SulA [Manihot esculenta]
9 Hb_000974_040 0.1794495036 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
10 Hb_004724_440 0.180834598 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006555_020 0.1811371357 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
12 Hb_000915_250 0.1816291908 - - chloroplast latex aldolase-like protein [Manihot esculenta]
13 Hb_002215_030 0.1830973079 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
14 Hb_020805_050 0.183314325 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
15 Hb_096267_010 0.1834911487 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
16 Hb_000011_510 0.183768607 - - Esterase precursor, putative [Ricinus communis]
17 Hb_000003_490 0.1860243928 - - PREDICTED: uncharacterized protein LOC105631559 isoform X2 [Jatropha curcas]
18 Hb_001377_080 0.1864282947 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
19 Hb_000189_400 0.1867788729 - - hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
20 Hb_099335_010 0.1882886303 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]

Gene co-expression network

sample Hb_000367_230 Hb_000367_230 Hb_000261_470 Hb_000261_470 Hb_000367_230--Hb_000261_470 Hb_011537_140 Hb_011537_140 Hb_000367_230--Hb_011537_140 Hb_180985_010 Hb_180985_010 Hb_000367_230--Hb_180985_010 Hb_000393_040 Hb_000393_040 Hb_000367_230--Hb_000393_040 Hb_002307_190 Hb_002307_190 Hb_000367_230--Hb_002307_190 Hb_000648_070 Hb_000648_070 Hb_000367_230--Hb_000648_070 Hb_000261_470--Hb_011537_140 Hb_020805_050 Hb_020805_050 Hb_000261_470--Hb_020805_050 Hb_007101_120 Hb_007101_120 Hb_000261_470--Hb_007101_120 Hb_004837_230 Hb_004837_230 Hb_000261_470--Hb_004837_230 Hb_001287_020 Hb_001287_020 Hb_000261_470--Hb_001287_020 Hb_011537_140--Hb_007101_120 Hb_000003_490 Hb_000003_490 Hb_011537_140--Hb_000003_490 Hb_011537_140--Hb_004837_230 Hb_000191_090 Hb_000191_090 Hb_011537_140--Hb_000191_090 Hb_011537_140--Hb_020805_050 Hb_000188_010 Hb_000188_010 Hb_180985_010--Hb_000188_010 Hb_000482_160 Hb_000482_160 Hb_180985_010--Hb_000482_160 Hb_001864_050 Hb_001864_050 Hb_180985_010--Hb_001864_050 Hb_001916_110 Hb_001916_110 Hb_180985_010--Hb_001916_110 Hb_003921_020 Hb_003921_020 Hb_180985_010--Hb_003921_020 Hb_180985_010--Hb_001287_020 Hb_137216_010 Hb_137216_010 Hb_000393_040--Hb_137216_010 Hb_000302_230 Hb_000302_230 Hb_000393_040--Hb_000302_230 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_003905_020 Hb_003905_020 Hb_002307_190--Hb_003905_020 Hb_006916_080 Hb_006916_080 Hb_002307_190--Hb_006916_080 Hb_000648_070--Hb_001287_020 Hb_002249_090 Hb_002249_090 Hb_000648_070--Hb_002249_090 Hb_000510_180 Hb_000510_180 Hb_000648_070--Hb_000510_180 Hb_002215_030 Hb_002215_030 Hb_000648_070--Hb_002215_030 Hb_028227_060 Hb_028227_060 Hb_000648_070--Hb_028227_060 Hb_002007_120 Hb_002007_120 Hb_000648_070--Hb_002007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14703 0.0522812 41.987 1.87546 0.238476 0.689497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27365 1.69568 0.144591 0 36.006

CAGE analysis