Hb_180985_010

Information

Type -
Description -
Location Contig180985: 2-850
Sequence    

Annotation

kegg
ID tcc:TCM_028838
description NDH-dependent cyclic electron flow 1 isoform 1
nr
ID XP_007024240.1
description NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
swissprot
ID Q9LU21
description Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana GN=PNSB3 PE=2 SV=1
trembl
ID A0A061GCI5
description NDH-dependent cyclic electron flow 1 isoform 1 OS=Theobroma cacao GN=TCM_028838 PE=4 SV=1
Gene Ontology
ID GO:0009535
description ndh-dependent cyclic electron flow 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180985_010 0.0 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
2 Hb_000188_010 0.0946387795 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
3 Hb_000482_160 0.0998649647 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
4 Hb_001864_050 0.1074855564 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
5 Hb_001916_110 0.1080407554 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
6 Hb_003921_020 0.1105916798 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
7 Hb_001287_020 0.1107125144 - - SulA [Manihot esculenta]
8 Hb_005618_030 0.1109289708 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
9 Hb_001662_090 0.1111222946 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_006775_100 0.1123677037 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
11 Hb_000937_010 0.113192658 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000648_070 0.1151372702 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
13 Hb_000030_070 0.1160076902 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002805_200 0.1197423911 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
15 Hb_003683_170 0.1213115368 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001338_120 0.1226197678 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
17 Hb_020805_050 0.1229266123 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
18 Hb_008013_020 0.1239067777 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
19 Hb_000115_020 0.1239083078 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
20 Hb_002215_030 0.1246852592 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_180985_010 Hb_180985_010 Hb_000188_010 Hb_000188_010 Hb_180985_010--Hb_000188_010 Hb_000482_160 Hb_000482_160 Hb_180985_010--Hb_000482_160 Hb_001864_050 Hb_001864_050 Hb_180985_010--Hb_001864_050 Hb_001916_110 Hb_001916_110 Hb_180985_010--Hb_001916_110 Hb_003921_020 Hb_003921_020 Hb_180985_010--Hb_003921_020 Hb_001287_020 Hb_001287_020 Hb_180985_010--Hb_001287_020 Hb_002078_280 Hb_002078_280 Hb_000188_010--Hb_002078_280 Hb_000030_070 Hb_000030_070 Hb_000188_010--Hb_000030_070 Hb_006261_020 Hb_006261_020 Hb_000188_010--Hb_006261_020 Hb_000188_010--Hb_003921_020 Hb_004235_070 Hb_004235_070 Hb_000188_010--Hb_004235_070 Hb_096267_010 Hb_096267_010 Hb_000188_010--Hb_096267_010 Hb_000482_160--Hb_001864_050 Hb_001338_120 Hb_001338_120 Hb_000482_160--Hb_001338_120 Hb_002805_200 Hb_002805_200 Hb_000482_160--Hb_002805_200 Hb_000281_120 Hb_000281_120 Hb_000482_160--Hb_000281_120 Hb_005305_140 Hb_005305_140 Hb_000482_160--Hb_005305_140 Hb_003651_030 Hb_003651_030 Hb_000482_160--Hb_003651_030 Hb_001864_050--Hb_002805_200 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_001864_050--Hb_000281_120 Hb_001864_050--Hb_005305_140 Hb_000749_140 Hb_000749_140 Hb_001916_110--Hb_000749_140 Hb_006775_100 Hb_006775_100 Hb_001916_110--Hb_006775_100 Hb_001916_110--Hb_002805_200 Hb_000340_280 Hb_000340_280 Hb_001916_110--Hb_000340_280 Hb_000928_100 Hb_000928_100 Hb_001916_110--Hb_000928_100 Hb_101133_030 Hb_101133_030 Hb_001916_110--Hb_101133_030 Hb_008013_020 Hb_008013_020 Hb_003921_020--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_003921_020--Hb_006573_110 Hb_003921_020--Hb_000281_120 Hb_000262_090 Hb_000262_090 Hb_003921_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_003921_020--Hb_000821_030 Hb_003921_020--Hb_003651_030 Hb_003683_170 Hb_003683_170 Hb_001287_020--Hb_003683_170 Hb_001287_020--Hb_000030_070 Hb_005618_030 Hb_005618_030 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0901052 0.801896 15.5803 1.43755 0.0704728 0.223196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164369 0 0 0 13.1217

CAGE analysis