Hb_003905_020

Information

Type -
Description -
Location Contig3905: 52592-53214
Sequence    

Annotation

kegg
ID vvi:100267275
description uncharacterized LOC100267275
nr
ID XP_011033361.1
description PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID W9S754
description Uncharacterized protein OS=Morus notabilis GN=L484_008498 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39149: 52638-53191 , PASA_asmbl_39150: 52735-52906
cDNA
(Sanger)
(ID:Location)		 023_P05.ab1: 52638-53165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003905_020 0.0 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
2 Hb_002307_190 0.1493977098 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
3 Hb_002759_080 0.1702711738 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
4 Hb_006916_080 0.1763798735 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
5 Hb_000393_040 0.2018650724 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
6 Hb_010638_010 0.2120608812 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
7 Hb_001379_120 0.213360658 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
8 Hb_000067_040 0.2158574152 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
9 Hb_002762_030 0.2182978743 - - hypothetical protein POPTR_0019s12370g, partial [Populus trichocarpa]
10 Hb_003517_110 0.2202501451 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
11 Hb_000302_230 0.2257365922 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002601_050 0.2266252687 - - Boron transporter, putative [Ricinus communis]
13 Hb_036437_010 0.233283426 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
14 Hb_004994_280 0.2334739947 - - hypothetical protein JCGZ_14421 [Jatropha curcas]
15 Hb_002324_090 0.2345133393 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
16 Hb_000123_360 0.2350370526 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000961_060 0.2392051404 - - uvb-resistance protein uvr8, putative [Ricinus communis]
18 Hb_001163_110 0.2397108388 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
19 Hb_000648_070 0.2429032921 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
20 Hb_001135_070 0.2438571768 - - glutathione-s-transferase omega, putative [Ricinus communis]

Gene co-expression network

sample Hb_003905_020 Hb_003905_020 Hb_002307_190 Hb_002307_190 Hb_003905_020--Hb_002307_190 Hb_002759_080 Hb_002759_080 Hb_003905_020--Hb_002759_080 Hb_006916_080 Hb_006916_080 Hb_003905_020--Hb_006916_080 Hb_000393_040 Hb_000393_040 Hb_003905_020--Hb_000393_040 Hb_010638_010 Hb_010638_010 Hb_003905_020--Hb_010638_010 Hb_001379_120 Hb_001379_120 Hb_003905_020--Hb_001379_120 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_137216_010 Hb_137216_010 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_002307_190--Hb_006916_080 Hb_000302_230 Hb_000302_230 Hb_002759_080--Hb_000302_230 Hb_000123_360 Hb_000123_360 Hb_002759_080--Hb_000123_360 Hb_033312_120 Hb_033312_120 Hb_002759_080--Hb_033312_120 Hb_000638_220 Hb_000638_220 Hb_002759_080--Hb_000638_220 Hb_000120_490 Hb_000120_490 Hb_002759_080--Hb_000120_490 Hb_000099_050 Hb_000099_050 Hb_006916_080--Hb_000099_050 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_001969_100 Hb_001969_100 Hb_006916_080--Hb_001969_100 Hb_002485_050 Hb_002485_050 Hb_006916_080--Hb_002485_050 Hb_000393_040--Hb_137216_010 Hb_000393_040--Hb_000302_230 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_010638_010--Hb_001379_120 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_001163_110 Hb_001163_110 Hb_010638_010--Hb_001163_110 Hb_001379_120--Hb_000329_500 Hb_000961_060 Hb_000961_060 Hb_001379_120--Hb_000961_060 Hb_003517_110 Hb_003517_110 Hb_001379_120--Hb_003517_110 Hb_001379_120--Hb_001163_110 Hb_001623_380 Hb_001623_380 Hb_001379_120--Hb_001623_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.324334 3.08551 61.1613 7.56945 0 0.501268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6215 2.24596 0 0.169455 54.8209

CAGE analysis