Hb_002759_080

Information

Type -
Description -
Location Contig2759: 72619-74162
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14590g
description POPTRDRAFT_564775; hypothetical protein
nr
ID XP_012092047.1
description PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21779 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28859: 72651-74362
cDNA
(Sanger)
(ID:Location)		 043_O08.ab1: 72758-74035 , 044_M13.ab1: 72692-73143

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_080 0.0 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
2 Hb_000302_230 0.166471369 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000123_360 0.1684411117 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003905_020 0.1702711738 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
5 Hb_033312_120 0.1824585934 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
6 Hb_000638_220 0.1833934643 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
7 Hb_000120_490 0.1878380067 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
8 Hb_009545_070 0.1879230428 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
9 Hb_110266_010 0.1889477366 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
10 Hb_001442_050 0.1894825989 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
11 Hb_002027_100 0.1906806017 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000345_400 0.1907475533 - - conserved hypothetical protein [Ricinus communis]
13 Hb_050514_020 0.1923516757 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
14 Hb_101133_040 0.1935416453 - - PREDICTED: nudix hydrolase 18, mitochondrial-like [Jatropha curcas]
15 Hb_006583_030 0.1936030164 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
16 Hb_060534_010 0.197530908 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
17 Hb_001662_090 0.1975351072 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004994_280 0.1976478109 - - hypothetical protein JCGZ_14421 [Jatropha curcas]
19 Hb_014068_010 0.1994818658 - - PREDICTED: phototropin-1 [Jatropha curcas]
20 Hb_006916_080 0.2009101209 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]

Gene co-expression network

sample Hb_002759_080 Hb_002759_080 Hb_000302_230 Hb_000302_230 Hb_002759_080--Hb_000302_230 Hb_000123_360 Hb_000123_360 Hb_002759_080--Hb_000123_360 Hb_003905_020 Hb_003905_020 Hb_002759_080--Hb_003905_020 Hb_033312_120 Hb_033312_120 Hb_002759_080--Hb_033312_120 Hb_000638_220 Hb_000638_220 Hb_002759_080--Hb_000638_220 Hb_000120_490 Hb_000120_490 Hb_002759_080--Hb_000120_490 Hb_000009_510 Hb_000009_510 Hb_000302_230--Hb_000009_510 Hb_000393_040 Hb_000393_040 Hb_000302_230--Hb_000393_040 Hb_006583_030 Hb_006583_030 Hb_000302_230--Hb_006583_030 Hb_006681_020 Hb_006681_020 Hb_000302_230--Hb_006681_020 Hb_137216_010 Hb_137216_010 Hb_000302_230--Hb_137216_010 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060 Hb_000358_160 Hb_000358_160 Hb_000123_360--Hb_000358_160 Hb_110266_010 Hb_110266_010 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000345_400 Hb_000345_400 Hb_000123_360--Hb_000345_400 Hb_000123_360--Hb_000638_220 Hb_002307_190 Hb_002307_190 Hb_003905_020--Hb_002307_190 Hb_006916_080 Hb_006916_080 Hb_003905_020--Hb_006916_080 Hb_003905_020--Hb_000393_040 Hb_010638_010 Hb_010638_010 Hb_003905_020--Hb_010638_010 Hb_001379_120 Hb_001379_120 Hb_003905_020--Hb_001379_120 Hb_002027_100 Hb_002027_100 Hb_033312_120--Hb_002027_100 Hb_002025_220 Hb_002025_220 Hb_033312_120--Hb_002025_220 Hb_061126_010 Hb_061126_010 Hb_033312_120--Hb_061126_010 Hb_000483_470 Hb_000483_470 Hb_033312_120--Hb_000483_470 Hb_023904_010 Hb_023904_010 Hb_033312_120--Hb_023904_010 Hb_005305_140 Hb_005305_140 Hb_033312_120--Hb_005305_140 Hb_000638_220--Hb_110266_010 Hb_000638_220--Hb_000345_400 Hb_000962_090 Hb_000962_090 Hb_000638_220--Hb_000962_090 Hb_092516_010 Hb_092516_010 Hb_000638_220--Hb_092516_010 Hb_007462_020 Hb_007462_020 Hb_000638_220--Hb_007462_020 Hb_000120_490--Hb_061126_010 Hb_074548_010 Hb_074548_010 Hb_000120_490--Hb_074548_010 Hb_000120_490--Hb_007462_020 Hb_121089_010 Hb_121089_010 Hb_000120_490--Hb_121089_010 Hb_002010_030 Hb_002010_030 Hb_000120_490--Hb_002010_030 Hb_000697_020 Hb_000697_020 Hb_000120_490--Hb_000697_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408258 10.723 53.1744 6.61685 0.325072 0.381842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.19606 1.47024 0.208766 0.575483 38.295

CAGE analysis