Hb_033312_120

Information

Type -
Description -
Location Contig33312: 105912-107517
Sequence    

Annotation

kegg
ID rcu:RCOM_0371590
description calcium ion binding protein, putative
nr
ID XP_012077824.1
description PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
swissprot
ID Q2V4B2
description PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1
trembl
ID A0A067KLQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13450 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbq-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34970: 105947-106833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_120 0.0 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
2 Hb_002027_100 0.1334019256 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002025_220 0.1340732196 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_061126_010 0.1368540864 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_000483_470 0.141401549 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_023904_010 0.142302959 - - -
7 Hb_005305_140 0.1429309522 - - unknown [Populus trichocarpa]
8 Hb_001442_050 0.1509817043 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
9 Hb_004109_140 0.1512805579 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008707_040 0.1558110739 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000834_170 0.1580336572 - - polygalacturonase, putative [Ricinus communis]
12 Hb_001662_090 0.1582539735 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002010_030 0.1584607751 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
14 Hb_000009_510 0.1584835627 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
15 Hb_001953_110 0.1592613718 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
16 Hb_001102_130 0.1600644928 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
17 Hb_000386_010 0.1636855668 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005227_030 0.1643957216 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
19 Hb_060534_010 0.1651780636 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
20 Hb_001864_050 0.1660207937 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]

Gene co-expression network

sample Hb_033312_120 Hb_033312_120 Hb_002027_100 Hb_002027_100 Hb_033312_120--Hb_002027_100 Hb_002025_220 Hb_002025_220 Hb_033312_120--Hb_002025_220 Hb_061126_010 Hb_061126_010 Hb_033312_120--Hb_061126_010 Hb_000483_470 Hb_000483_470 Hb_033312_120--Hb_000483_470 Hb_023904_010 Hb_023904_010 Hb_033312_120--Hb_023904_010 Hb_005305_140 Hb_005305_140 Hb_033312_120--Hb_005305_140 Hb_001442_050 Hb_001442_050 Hb_002027_100--Hb_001442_050 Hb_002027_100--Hb_000483_470 Hb_101133_040 Hb_101133_040 Hb_002027_100--Hb_101133_040 Hb_000345_400 Hb_000345_400 Hb_002027_100--Hb_000345_400 Hb_060534_010 Hb_060534_010 Hb_002027_100--Hb_060534_010 Hb_000294_020 Hb_000294_020 Hb_002027_100--Hb_000294_020 Hb_002025_220--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_002025_220--Hb_000834_170 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270 Hb_000697_020 Hb_000697_020 Hb_061126_010--Hb_000697_020 Hb_000120_490 Hb_000120_490 Hb_061126_010--Hb_000120_490 Hb_000705_010 Hb_000705_010 Hb_061126_010--Hb_000705_010 Hb_063405_010 Hb_063405_010 Hb_061126_010--Hb_063405_010 Hb_002010_030 Hb_002010_030 Hb_061126_010--Hb_002010_030 Hb_001172_150 Hb_001172_150 Hb_061126_010--Hb_001172_150 Hb_000483_470--Hb_000294_020 Hb_003777_090 Hb_003777_090 Hb_000483_470--Hb_003777_090 Hb_000483_470--Hb_004109_140 Hb_000928_100 Hb_000928_100 Hb_000483_470--Hb_000928_100 Hb_000483_470--Hb_060534_010 Hb_000025_700 Hb_000025_700 Hb_000483_470--Hb_000025_700 Hb_001953_110 Hb_001953_110 Hb_023904_010--Hb_001953_110 Hb_005227_030 Hb_005227_030 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_005305_140--Hb_004109_140 Hb_005305_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_005305_140--Hb_001864_050 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_005305_140--Hb_000834_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.249846 3.10802 13.4595 1.01227 0.093532 0.0588843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0766384 0.482018 0.107977 0.269219 11.4938

CAGE analysis