Hb_002307_190

Information

Type -
Description -
Location Contig2307: 137414-149126
Sequence    

Annotation

kegg
ID rcu:RCOM_0909420
description hypothetical protein
nr
ID XP_012069751.1
description PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
swissprot
ID Q940Y9
description Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1
trembl
ID B9RTF9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0909420 PE=4 SV=1
Gene Ontology
ID GO:0008324
description ion channel pollux-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24253: 137272-141503 , PASA_asmbl_24254: 137272-141503 , PASA_asmbl_24255: 141527-149087 , PASA_asmbl_24256: 142188-142300 , PASA_asmbl_24257: 146958-148870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_190 0.0 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
2 Hb_000393_040 0.1185635752 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
3 Hb_000174_080 0.1421895997 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
4 Hb_137216_010 0.1430967699 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
5 Hb_002071_030 0.1457937539 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
6 Hb_003905_020 0.1493977098 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
7 Hb_006916_080 0.1526734086 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
8 Hb_000302_230 0.1593377471 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000009_510 0.1622158916 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
10 Hb_000367_230 0.1724344906 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_002249_090 0.1729658699 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_177281_010 0.1769664476 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
13 Hb_015175_040 0.1794419046 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000130_330 0.1798988029 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
15 Hb_000648_070 0.1813697529 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
16 Hb_000974_040 0.1818548603 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
17 Hb_001969_100 0.1826741873 - - signal transducer, putative [Ricinus communis]
18 Hb_011519_050 0.1856145822 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
19 Hb_004007_170 0.1859727953 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000703_070 0.1862532137 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_190 Hb_002307_190 Hb_000393_040 Hb_000393_040 Hb_002307_190--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_002307_190--Hb_000174_080 Hb_137216_010 Hb_137216_010 Hb_002307_190--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_002307_190--Hb_002071_030 Hb_003905_020 Hb_003905_020 Hb_002307_190--Hb_003905_020 Hb_006916_080 Hb_006916_080 Hb_002307_190--Hb_006916_080 Hb_000393_040--Hb_137216_010 Hb_000302_230 Hb_000302_230 Hb_000393_040--Hb_000302_230 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000009_510 Hb_000009_510 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_002249_090 Hb_002249_090 Hb_000174_080--Hb_002249_090 Hb_000174_080--Hb_137216_010 Hb_000174_080--Hb_002071_030 Hb_003602_100 Hb_003602_100 Hb_000174_080--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_000174_080--Hb_007803_040 Hb_000174_080--Hb_000009_510 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_000768_120 Hb_000768_120 Hb_137216_010--Hb_000768_120 Hb_137216_010--Hb_000009_510 Hb_137216_010--Hb_000302_230 Hb_134949_010 Hb_134949_010 Hb_002071_030--Hb_134949_010 Hb_001268_170 Hb_001268_170 Hb_002071_030--Hb_001268_170 Hb_002071_030--Hb_003602_100 Hb_001195_290 Hb_001195_290 Hb_002071_030--Hb_001195_290 Hb_002071_030--Hb_002249_090 Hb_002759_080 Hb_002759_080 Hb_003905_020--Hb_002759_080 Hb_003905_020--Hb_006916_080 Hb_003905_020--Hb_000393_040 Hb_010638_010 Hb_010638_010 Hb_003905_020--Hb_010638_010 Hb_001379_120 Hb_001379_120 Hb_003905_020--Hb_001379_120 Hb_000099_050 Hb_000099_050 Hb_006916_080--Hb_000099_050 Hb_006916_080--Hb_000393_040 Hb_021531_010 Hb_021531_010 Hb_006916_080--Hb_021531_010 Hb_001969_100 Hb_001969_100 Hb_006916_080--Hb_001969_100 Hb_002485_050 Hb_002485_050 Hb_006916_080--Hb_002485_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.817333 0.379651 19.2563 2.56235 0.212768 0.305861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4177 0.788497 0.322029 0.296366 20.7056

CAGE analysis