Hb_001141_340

Information

Type -
Description -
Location Contig1141: 234085-236574
Sequence    

Annotation

kegg
ID rcu:RCOM_0912000
description cysteine synthase, putative (EC:2.5.1.51)
nr
ID XP_012069631.1
description PREDICTED: cysteine synthase [Jatropha curcas]
swissprot
ID Q43317
description Cysteine synthase OS=Citrullus lanatus PE=1 SV=1
trembl
ID A0A067KYZ6
description Cysteine synthase OS=Jatropha curcas GN=JCGZ_02176 PE=3 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04265: 234059-235039 , PASA_asmbl_04266: 235290-235995 , PASA_asmbl_04267: 236521-236654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_340 0.0 - - PREDICTED: cysteine synthase [Jatropha curcas]
2 Hb_000069_760 0.0823780635 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
3 Hb_000390_160 0.0858662477 - - PREDICTED: adenosine kinase [Jatropha curcas]
4 Hb_003120_020 0.0949651766 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
5 Hb_002592_040 0.0973024632 - - ACC oxidase 3 [Hevea brasiliensis]
6 Hb_004899_190 0.1024935928 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
7 Hb_001268_170 0.102666677 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
8 Hb_003020_120 0.1045063113 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
9 Hb_009193_020 0.108706295 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
10 Hb_002870_070 0.1091546648 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_001534_060 0.1139544862 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
12 Hb_000049_100 0.1162356256 - - Photosystem II reaction center W protein, putative [Ricinus communis]
13 Hb_027380_080 0.1168322871 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
14 Hb_000008_160 0.1181461963 - - carboxy-lyase, putative [Ricinus communis]
15 Hb_000948_240 0.1182404502 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011282_040 0.1202693195 - - Sec14 cytosolic factor, putative [Ricinus communis]
17 Hb_000185_010 0.1215294676 - - Alliin lyase precursor, putative [Ricinus communis]
18 Hb_000808_130 0.1216065184 - - 3-5 exonuclease, putative [Ricinus communis]
19 Hb_006198_030 0.1220836652 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000676_320 0.1227479819 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]

Gene co-expression network

sample Hb_001141_340 Hb_001141_340 Hb_000069_760 Hb_000069_760 Hb_001141_340--Hb_000069_760 Hb_000390_160 Hb_000390_160 Hb_001141_340--Hb_000390_160 Hb_003120_020 Hb_003120_020 Hb_001141_340--Hb_003120_020 Hb_002592_040 Hb_002592_040 Hb_001141_340--Hb_002592_040 Hb_004899_190 Hb_004899_190 Hb_001141_340--Hb_004899_190 Hb_001268_170 Hb_001268_170 Hb_001141_340--Hb_001268_170 Hb_000069_760--Hb_000390_160 Hb_000185_010 Hb_000185_010 Hb_000069_760--Hb_000185_010 Hb_006132_080 Hb_006132_080 Hb_000069_760--Hb_006132_080 Hb_002121_050 Hb_002121_050 Hb_000069_760--Hb_002121_050 Hb_156093_010 Hb_156093_010 Hb_000069_760--Hb_156093_010 Hb_003777_080 Hb_003777_080 Hb_000069_760--Hb_003777_080 Hb_000049_100 Hb_000049_100 Hb_000390_160--Hb_000049_100 Hb_000390_160--Hb_003777_080 Hb_001958_060 Hb_001958_060 Hb_000390_160--Hb_001958_060 Hb_005210_010 Hb_005210_010 Hb_000390_160--Hb_005210_010 Hb_003120_020--Hb_000049_100 Hb_000808_130 Hb_000808_130 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_010326_020 Hb_010326_020 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_000948_240 Hb_000948_240 Hb_002592_040--Hb_000948_240 Hb_013405_110 Hb_013405_110 Hb_002592_040--Hb_013405_110 Hb_005375_090 Hb_005375_090 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_001862_040 Hb_001862_040 Hb_002592_040--Hb_001862_040 Hb_003747_090 Hb_003747_090 Hb_002592_040--Hb_003747_090 Hb_000703_340 Hb_000703_340 Hb_004899_190--Hb_000703_340 Hb_004452_070 Hb_004452_070 Hb_004899_190--Hb_004452_070 Hb_003020_120 Hb_003020_120 Hb_004899_190--Hb_003020_120 Hb_000979_120 Hb_000979_120 Hb_004899_190--Hb_000979_120 Hb_004899_190--Hb_013405_110 Hb_001936_100 Hb_001936_100 Hb_004899_190--Hb_001936_100 Hb_011282_040 Hb_011282_040 Hb_001268_170--Hb_011282_040 Hb_001268_170--Hb_000390_160 Hb_001195_290 Hb_001195_290 Hb_001268_170--Hb_001195_290 Hb_001268_170--Hb_005210_010 Hb_002071_030 Hb_002071_030 Hb_001268_170--Hb_002071_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0146073 4.96891 1.9463 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12051 0.157992 0.0588066 0.151873 7.98184

CAGE analysis