Hb_011609_130

Information

Type -
Description -
Location Contig11609: 113434-114407
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04961: 113400-114443
cDNA
(Sanger)
(ID:Location)		 021_A22.ab1: 113403-114133 , 030_K15.ab1: 113403-114078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_130 0.0 - - -
2 Hb_001241_020 0.1124895174 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
3 Hb_000732_110 0.1369991791 - - hypothetical protein JCGZ_21339 [Jatropha curcas]
4 Hb_005162_120 0.1606222387 - - ferric reductase oxidase [Manihot esculenta]
5 Hb_002639_170 0.1684288512 - - carboxy-lyase, putative [Ricinus communis]
6 Hb_000028_010 0.1703544116 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002799_120 0.171446236 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
8 Hb_007317_100 0.1725078977 - - Peflin, putative [Ricinus communis]
9 Hb_000926_030 0.1758585646 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000424_050 0.1780558001 - - erecta, putative [Ricinus communis]
11 Hb_000243_180 0.1841872301 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
12 Hb_024494_010 0.194921601 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
13 Hb_001926_010 0.1972268332 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
14 Hb_000264_160 0.1981134781 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
15 Hb_006649_100 0.1982479166 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_001123_340 0.1988733445 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
17 Hb_000431_080 0.2000169926 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
18 Hb_000668_100 0.2001681337 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
19 Hb_089736_010 0.2009131157 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
20 Hb_006909_050 0.2013959501 transcription factor TF Family: OFP hypothetical protein POPTR_0008s01840g [Populus trichocarpa]

Gene co-expression network

sample Hb_011609_130 Hb_011609_130 Hb_001241_020 Hb_001241_020 Hb_011609_130--Hb_001241_020 Hb_000732_110 Hb_000732_110 Hb_011609_130--Hb_000732_110 Hb_005162_120 Hb_005162_120 Hb_011609_130--Hb_005162_120 Hb_002639_170 Hb_002639_170 Hb_011609_130--Hb_002639_170 Hb_000028_010 Hb_000028_010 Hb_011609_130--Hb_000028_010 Hb_002799_120 Hb_002799_120 Hb_011609_130--Hb_002799_120 Hb_000243_180 Hb_000243_180 Hb_001241_020--Hb_000243_180 Hb_001926_010 Hb_001926_010 Hb_001241_020--Hb_001926_010 Hb_006909_050 Hb_006909_050 Hb_001241_020--Hb_006909_050 Hb_000731_030 Hb_000731_030 Hb_001241_020--Hb_000731_030 Hb_001241_020--Hb_000028_010 Hb_000732_110--Hb_002639_170 Hb_000926_030 Hb_000926_030 Hb_000732_110--Hb_000926_030 Hb_000128_030 Hb_000128_030 Hb_000732_110--Hb_000128_030 Hb_000732_110--Hb_001241_020 Hb_000261_530 Hb_000261_530 Hb_000732_110--Hb_000261_530 Hb_000115_190 Hb_000115_190 Hb_005162_120--Hb_000115_190 Hb_000028_250 Hb_000028_250 Hb_005162_120--Hb_000028_250 Hb_005162_120--Hb_002639_170 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_007002_050 Hb_007002_050 Hb_005162_120--Hb_007002_050 Hb_005162_120--Hb_001241_020 Hb_002639_170--Hb_000261_530 Hb_010288_050 Hb_010288_050 Hb_002639_170--Hb_010288_050 Hb_002639_170--Hb_001241_020 Hb_007317_100 Hb_007317_100 Hb_002639_170--Hb_007317_100 Hb_018663_010 Hb_018663_010 Hb_000028_010--Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_000028_010--Hb_010737_030 Hb_000051_130 Hb_000051_130 Hb_000028_010--Hb_000051_130 Hb_000496_100 Hb_000496_100 Hb_000028_010--Hb_000496_100 Hb_102900_010 Hb_102900_010 Hb_000028_010--Hb_102900_010 Hb_008165_010 Hb_008165_010 Hb_000028_010--Hb_008165_010 Hb_002799_120--Hb_007317_100 Hb_006649_100 Hb_006649_100 Hb_002799_120--Hb_006649_100 Hb_000264_160 Hb_000264_160 Hb_002799_120--Hb_000264_160 Hb_000347_170 Hb_000347_170 Hb_002799_120--Hb_000347_170 Hb_005375_100 Hb_005375_100 Hb_002799_120--Hb_005375_100 Hb_000574_380 Hb_000574_380 Hb_002799_120--Hb_000574_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0377501 0.465784 31.3922 4.11065 0.0354397 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 3.15772 0 0.0840013 5.66228

CAGE analysis