Hb_000926_030

Information

Type -
Description -
Location Contig926: 40247-50258
Sequence    

Annotation

kegg
ID rcu:RCOM_1302870
description zinc finger protein, putative
nr
ID XP_002529910.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FIA1
description GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1
trembl
ID B9SV91
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1302870 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g55050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62644: 48245-50508
cDNA
(Sanger)
(ID:Location)		 015_F21.ab1: 48245-49669 , 031_F10.ab1: 48245-49667

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_030 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000128_030 0.1151174365 - - conserved hypothetical protein [Ricinus communis]
3 Hb_024494_010 0.1553332134 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
4 Hb_000961_060 0.1693388074 - - uvb-resistance protein uvr8, putative [Ricinus communis]
5 Hb_004096_230 0.1720615072 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
6 Hb_011609_130 0.1758585646 - - -
7 Hb_008221_190 0.1788730072 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
8 Hb_001135_070 0.1831780566 - - glutathione-s-transferase omega, putative [Ricinus communis]
9 Hb_003050_140 0.1859665118 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
10 Hb_011930_190 0.1877876978 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
11 Hb_003517_110 0.189580967 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
12 Hb_007317_100 0.1918469235 - - Peflin, putative [Ricinus communis]
13 Hb_001439_160 0.192494435 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
14 Hb_000465_030 0.1952730285 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
15 Hb_000107_580 0.1979071452 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
16 Hb_031377_010 0.1979916167 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
17 Hb_001623_380 0.1980898372 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
18 Hb_002044_100 0.2002536842 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
19 Hb_005460_040 0.2035704141 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
20 Hb_000144_130 0.2053310464 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000926_030 Hb_000926_030 Hb_000128_030 Hb_000128_030 Hb_000926_030--Hb_000128_030 Hb_024494_010 Hb_024494_010 Hb_000926_030--Hb_024494_010 Hb_000961_060 Hb_000961_060 Hb_000926_030--Hb_000961_060 Hb_004096_230 Hb_004096_230 Hb_000926_030--Hb_004096_230 Hb_011609_130 Hb_011609_130 Hb_000926_030--Hb_011609_130 Hb_008221_190 Hb_008221_190 Hb_000926_030--Hb_008221_190 Hb_000062_210 Hb_000062_210 Hb_000128_030--Hb_000062_210 Hb_030627_010 Hb_030627_010 Hb_000128_030--Hb_030627_010 Hb_000732_110 Hb_000732_110 Hb_000128_030--Hb_000732_110 Hb_000128_030--Hb_004096_230 Hb_000184_010 Hb_000184_010 Hb_000128_030--Hb_000184_010 Hb_007520_050 Hb_007520_050 Hb_024494_010--Hb_007520_050 Hb_001357_160 Hb_001357_160 Hb_024494_010--Hb_001357_160 Hb_000107_580 Hb_000107_580 Hb_024494_010--Hb_000107_580 Hb_001386_060 Hb_001386_060 Hb_024494_010--Hb_001386_060 Hb_001856_190 Hb_001856_190 Hb_024494_010--Hb_001856_190 Hb_001439_050 Hb_001439_050 Hb_024494_010--Hb_001439_050 Hb_002843_130 Hb_002843_130 Hb_000961_060--Hb_002843_130 Hb_000483_270 Hb_000483_270 Hb_000961_060--Hb_000483_270 Hb_007317_100 Hb_007317_100 Hb_000961_060--Hb_007317_100 Hb_000123_360 Hb_000123_360 Hb_000961_060--Hb_000123_360 Hb_003517_110 Hb_003517_110 Hb_000961_060--Hb_003517_110 Hb_001135_070 Hb_001135_070 Hb_000961_060--Hb_001135_070 Hb_007120_120 Hb_007120_120 Hb_004096_230--Hb_007120_120 Hb_001652_100 Hb_001652_100 Hb_004096_230--Hb_001652_100 Hb_006711_030 Hb_006711_030 Hb_004096_230--Hb_006711_030 Hb_009663_020 Hb_009663_020 Hb_004096_230--Hb_009663_020 Hb_167188_020 Hb_167188_020 Hb_004096_230--Hb_167188_020 Hb_007044_240 Hb_007044_240 Hb_004096_230--Hb_007044_240 Hb_001241_020 Hb_001241_020 Hb_011609_130--Hb_001241_020 Hb_011609_130--Hb_000732_110 Hb_005162_120 Hb_005162_120 Hb_011609_130--Hb_005162_120 Hb_002639_170 Hb_002639_170 Hb_011609_130--Hb_002639_170 Hb_000028_010 Hb_000028_010 Hb_011609_130--Hb_000028_010 Hb_002799_120 Hb_002799_120 Hb_011609_130--Hb_002799_120 Hb_000958_060 Hb_000958_060 Hb_008221_190--Hb_000958_060 Hb_163950_090 Hb_163950_090 Hb_008221_190--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_008221_190--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_008221_190--Hb_145188_010 Hb_002710_040 Hb_002710_040 Hb_008221_190--Hb_002710_040 Hb_001942_060 Hb_001942_060 Hb_008221_190--Hb_001942_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00884762 0.157697 27.3083 7.9902 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140659 3.92118 0.0300631 0.169681 12.299

CAGE analysis