Hb_000321_130

Information

Type -
Description -
Location Contig321: 201540-204637
Sequence    

Annotation

kegg
ID rcu:RCOM_1313890
description Alcohol dehydrogenase, putative (EC:1.1.1.284)
nr
ID XP_002518925.1
description Alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID A1L4Y2
description Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1
trembl
ID B9RYV6
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1313890 PE=3 SV=1
Gene Ontology
ID GO:0008270
description alcohol dehydrogenase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33947: 201925-204609 , PASA_asmbl_33948: 201941-204656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_130 0.0 - - Alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_004324_160 0.2018596453 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_007547_020 0.2147023371 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
4 Hb_000703_040 0.2292004909 - - hypothetical protein RCOM_1177160 [Ricinus communis]
5 Hb_012338_020 0.2321397718 - - -
6 Hb_002259_190 0.244634595 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
7 Hb_054865_070 0.3079509462 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
8 Hb_080749_010 0.3106226528 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
9 Hb_000538_180 0.3147119593 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
10 Hb_010519_030 0.3152731582 - - -
11 Hb_009707_030 0.3366776903 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
12 Hb_003020_170 0.3373952252 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
13 Hb_001141_110 0.3374406279 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
14 Hb_000388_030 0.3448494604 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
15 Hb_014720_010 0.3502484401 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004129_160 0.3519562796 - - small heat-shock protein, putative [Ricinus communis]
17 Hb_000008_380 0.3571781032 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000599_320 0.3581687523 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
19 Hb_005656_190 0.3657893943 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
20 Hb_001008_140 0.3685362633 - - -

Gene co-expression network

sample Hb_000321_130 Hb_000321_130 Hb_004324_160 Hb_004324_160 Hb_000321_130--Hb_004324_160 Hb_007547_020 Hb_007547_020 Hb_000321_130--Hb_007547_020 Hb_000703_040 Hb_000703_040 Hb_000321_130--Hb_000703_040 Hb_012338_020 Hb_012338_020 Hb_000321_130--Hb_012338_020 Hb_002259_190 Hb_002259_190 Hb_000321_130--Hb_002259_190 Hb_054865_070 Hb_054865_070 Hb_000321_130--Hb_054865_070 Hb_004324_160--Hb_007547_020 Hb_004324_160--Hb_002259_190 Hb_004324_160--Hb_000703_040 Hb_004324_160--Hb_012338_020 Hb_004324_160--Hb_054865_070 Hb_007547_020--Hb_012338_020 Hb_001008_140 Hb_001008_140 Hb_007547_020--Hb_001008_140 Hb_011249_040 Hb_011249_040 Hb_007547_020--Hb_011249_040 Hb_103604_010 Hb_103604_010 Hb_007547_020--Hb_103604_010 Hb_000703_040--Hb_002259_190 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_000703_040--Hb_054865_070 Hb_014720_010 Hb_014720_010 Hb_000703_040--Hb_014720_010 Hb_008505_020 Hb_008505_020 Hb_012338_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_012338_020--Hb_033835_020 Hb_001741_130 Hb_001741_130 Hb_012338_020--Hb_001741_130 Hb_002259_190--Hb_054865_070 Hb_010519_030 Hb_010519_030 Hb_002259_190--Hb_010519_030 Hb_001214_080 Hb_001214_080 Hb_002259_190--Hb_001214_080 Hb_004129_160 Hb_004129_160 Hb_054865_070--Hb_004129_160 Hb_054865_070--Hb_010519_030 Hb_054865_070--Hb_001214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.95939 0.457736 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 5.30439 5.31766 0.127159 0.331952

CAGE analysis