Hb_002259_190

Information

Type -
Description -
Location Contig2259: 138590-140608
Sequence    

Annotation

kegg
ID rcu:RCOM_0612610
description Omega-3 fatty acid desaturase, endoplasmic reticulum, putative (EC:1.14.99.33)
nr
ID XP_002525657.1
description Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
swissprot
ID P48619
description Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1
trembl
ID B9SI38
description Omega-3 fatty acid desaturase, endoplasmic reticulum, putative OS=Ricinus communis GN=RCOM_0612610 PE=4 SV=1
Gene Ontology
ID GO:0016717
description omega-3 fatty acid desaturase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23478: 139664-140212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_190 0.0 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
2 Hb_054865_070 0.1450775058 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
3 Hb_000703_040 0.1914154075 - - hypothetical protein RCOM_1177160 [Ricinus communis]
4 Hb_004324_160 0.2178980946 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
5 Hb_000321_130 0.244634595 - - Alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_010519_030 0.2859124529 - - -
7 Hb_001214_080 0.2946925444 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
8 Hb_000033_040 0.2971065853 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004129_160 0.2976170324 - - small heat-shock protein, putative [Ricinus communis]
10 Hb_009680_040 0.3022698238 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_014720_010 0.3083156548 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001141_110 0.3127951851 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
13 Hb_003020_170 0.3273266645 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
14 Hb_000589_160 0.3298201385 - - PREDICTED: expansin-A4 [Jatropha curcas]
15 Hb_001369_600 0.3340313391 - - kinase, putative [Ricinus communis]
16 Hb_001638_070 0.3392340898 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
17 Hb_000388_030 0.3393353958 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
18 Hb_001247_330 0.3454241805 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
19 Hb_012573_010 0.3459028657 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
20 Hb_007441_170 0.3465182759 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]

Gene co-expression network

sample Hb_002259_190 Hb_002259_190 Hb_054865_070 Hb_054865_070 Hb_002259_190--Hb_054865_070 Hb_000703_040 Hb_000703_040 Hb_002259_190--Hb_000703_040 Hb_004324_160 Hb_004324_160 Hb_002259_190--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_002259_190--Hb_000321_130 Hb_010519_030 Hb_010519_030 Hb_002259_190--Hb_010519_030 Hb_001214_080 Hb_001214_080 Hb_002259_190--Hb_001214_080 Hb_054865_070--Hb_004324_160 Hb_004129_160 Hb_004129_160 Hb_054865_070--Hb_004129_160 Hb_054865_070--Hb_000703_040 Hb_054865_070--Hb_010519_030 Hb_054865_070--Hb_001214_080 Hb_000703_040--Hb_004324_160 Hb_000703_040--Hb_000321_130 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_014720_010 Hb_014720_010 Hb_000703_040--Hb_014720_010 Hb_004324_160--Hb_000321_130 Hb_007547_020 Hb_007547_020 Hb_004324_160--Hb_007547_020 Hb_012338_020 Hb_012338_020 Hb_004324_160--Hb_012338_020 Hb_000321_130--Hb_007547_020 Hb_000321_130--Hb_012338_020 Hb_000321_130--Hb_054865_070 Hb_003777_360 Hb_003777_360 Hb_010519_030--Hb_003777_360 Hb_000223_180 Hb_000223_180 Hb_010519_030--Hb_000223_180 Hb_001638_070 Hb_001638_070 Hb_010519_030--Hb_001638_070 Hb_010519_030--Hb_004324_160 Hb_001951_250 Hb_001951_250 Hb_010519_030--Hb_001951_250 Hb_000130_230 Hb_000130_230 Hb_010519_030--Hb_000130_230 Hb_001247_330 Hb_001247_330 Hb_001214_080--Hb_001247_330 Hb_002150_050 Hb_002150_050 Hb_001214_080--Hb_002150_050 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_000033_040 Hb_000033_040 Hb_001214_080--Hb_000033_040 Hb_001767_050 Hb_001767_050 Hb_001214_080--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001214_080--Hb_000962_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0466637 0.0128963 2.27447 0.461517 0.0145698 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0709533 6.94926 2.14013 0.200846 0

CAGE analysis