Hb_004324_160

Information

Type -
Description -
Location Contig4324: 111216-113112
Sequence    

Annotation

kegg
ID egr:104439476
description uncharacterized LOC104439476
nr
ID XP_012080915.1
description PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2U001
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G092500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42319: 113196-113646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_160 0.0 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
2 Hb_000321_130 0.2018596453 - - Alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_007547_020 0.211244673 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
4 Hb_002259_190 0.2178980946 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
5 Hb_000703_040 0.222418157 - - hypothetical protein RCOM_1177160 [Ricinus communis]
6 Hb_012338_020 0.2277341411 - - -
7 Hb_054865_070 0.2516178597 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
8 Hb_010519_030 0.2791450565 - - -
9 Hb_000388_030 0.3210205513 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
10 Hb_002725_060 0.3394916169 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
11 Hb_004994_110 0.3396511539 - - -
12 Hb_167711_040 0.3487618598 - - PREDICTED: cucumisin-like [Jatropha curcas]
13 Hb_000703_050 0.3639566674 - - conserved hypothetical protein [Ricinus communis]
14 Hb_103604_010 0.3709597738 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_001247_330 0.3721069537 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
16 Hb_080749_010 0.377706759 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
17 Hb_001214_080 0.3779859454 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
18 Hb_000033_040 0.3785451065 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000756_020 0.3797724636 - - BnaA05g19440D [Brassica napus]
20 Hb_001146_060 0.3814186588 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004324_160 Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_004324_160--Hb_000321_130 Hb_007547_020 Hb_007547_020 Hb_004324_160--Hb_007547_020 Hb_002259_190 Hb_002259_190 Hb_004324_160--Hb_002259_190 Hb_000703_040 Hb_000703_040 Hb_004324_160--Hb_000703_040 Hb_012338_020 Hb_012338_020 Hb_004324_160--Hb_012338_020 Hb_054865_070 Hb_054865_070 Hb_004324_160--Hb_054865_070 Hb_000321_130--Hb_007547_020 Hb_000321_130--Hb_000703_040 Hb_000321_130--Hb_012338_020 Hb_000321_130--Hb_002259_190 Hb_000321_130--Hb_054865_070 Hb_007547_020--Hb_012338_020 Hb_001008_140 Hb_001008_140 Hb_007547_020--Hb_001008_140 Hb_011249_040 Hb_011249_040 Hb_007547_020--Hb_011249_040 Hb_103604_010 Hb_103604_010 Hb_007547_020--Hb_103604_010 Hb_002259_190--Hb_054865_070 Hb_002259_190--Hb_000703_040 Hb_010519_030 Hb_010519_030 Hb_002259_190--Hb_010519_030 Hb_001214_080 Hb_001214_080 Hb_002259_190--Hb_001214_080 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_000703_040--Hb_054865_070 Hb_014720_010 Hb_014720_010 Hb_000703_040--Hb_014720_010 Hb_008505_020 Hb_008505_020 Hb_012338_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_012338_020--Hb_033835_020 Hb_001741_130 Hb_001741_130 Hb_012338_020--Hb_001741_130 Hb_004129_160 Hb_004129_160 Hb_054865_070--Hb_004129_160 Hb_054865_070--Hb_010519_030 Hb_054865_070--Hb_001214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0597864 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.138335 0.0841753 0 0

CAGE analysis