Hb_007547_020

Information

Type -
Description -
Location Contig7547: 7619-34900
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_011004631.1
description PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0016301
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007547_020 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
2 Hb_012338_020 0.0981804007 - - -
3 Hb_004324_160 0.211244673 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_000321_130 0.2147023371 - - Alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_001008_140 0.2877627019 - - -
6 Hb_011249_040 0.3150426226 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
7 Hb_103604_010 0.3220867682 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_080749_010 0.32626053 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
9 Hb_000703_040 0.3285433775 - - hypothetical protein RCOM_1177160 [Ricinus communis]
10 Hb_008505_020 0.3474574125 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_033835_020 0.3474580153 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_005531_010 0.347539422 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
13 Hb_001741_130 0.3479294523 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
14 Hb_163268_010 0.347937537 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
15 Hb_002240_040 0.3489990261 - - -
16 Hb_000756_020 0.3515276229 - - BnaA05g19440D [Brassica napus]
17 Hb_010519_030 0.3600864818 - - -
18 Hb_005615_050 0.3638915815 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
19 Hb_039229_010 0.3651800827 - - -
20 Hb_002259_190 0.3696201124 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]

Gene co-expression network

sample Hb_007547_020 Hb_007547_020 Hb_012338_020 Hb_012338_020 Hb_007547_020--Hb_012338_020 Hb_004324_160 Hb_004324_160 Hb_007547_020--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_007547_020--Hb_000321_130 Hb_001008_140 Hb_001008_140 Hb_007547_020--Hb_001008_140 Hb_011249_040 Hb_011249_040 Hb_007547_020--Hb_011249_040 Hb_103604_010 Hb_103604_010 Hb_007547_020--Hb_103604_010 Hb_012338_020--Hb_004324_160 Hb_012338_020--Hb_000321_130 Hb_008505_020 Hb_008505_020 Hb_012338_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_012338_020--Hb_033835_020 Hb_001741_130 Hb_001741_130 Hb_012338_020--Hb_001741_130 Hb_004324_160--Hb_000321_130 Hb_002259_190 Hb_002259_190 Hb_004324_160--Hb_002259_190 Hb_000703_040 Hb_000703_040 Hb_004324_160--Hb_000703_040 Hb_054865_070 Hb_054865_070 Hb_004324_160--Hb_054865_070 Hb_000321_130--Hb_000703_040 Hb_000321_130--Hb_002259_190 Hb_000321_130--Hb_054865_070 Hb_003799_020 Hb_003799_020 Hb_001008_140--Hb_003799_020 Hb_001221_280 Hb_001221_280 Hb_001008_140--Hb_001221_280 Hb_000856_160 Hb_000856_160 Hb_001008_140--Hb_000856_160 Hb_003659_020 Hb_003659_020 Hb_001008_140--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_001008_140--Hb_008035_050 Hb_168925_010 Hb_168925_010 Hb_011249_040--Hb_168925_010 Hb_039229_010 Hb_039229_010 Hb_011249_040--Hb_039229_010 Hb_080749_010 Hb_080749_010 Hb_011249_040--Hb_080749_010 Hb_000264_220 Hb_000264_220 Hb_011249_040--Hb_000264_220 Hb_011249_040--Hb_012338_020 Hb_002240_040 Hb_002240_040 Hb_011249_040--Hb_002240_040 Hb_103604_010--Hb_012338_020 Hb_001190_090 Hb_001190_090 Hb_103604_010--Hb_001190_090 Hb_002118_040 Hb_002118_040 Hb_103604_010--Hb_002118_040 Hb_001391_140 Hb_001391_140 Hb_103604_010--Hb_001391_140 Hb_000453_110 Hb_000453_110 Hb_103604_010--Hb_000453_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00875675 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0105574 0.0202194 0 0

CAGE analysis