Hb_000453_110

Information

Type -
Description -
Location Contig453: 54290-57967
Sequence    

Annotation

kegg
ID cit:102620339
description alkaline/neutral invertase CINV2-like
nr
ID XP_006473178.1
description PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Citrus sinensis]
swissprot
ID Q67XD9
description Alkaline/neutral invertase CINV2 OS=Arabidopsis thaliana GN=CINV2 PE=1 SV=1
trembl
ID E9KF95
description Neutral/alkaline invertase 2 OS=Hevea brasiliensis GN=NIN2 PE=2 SV=1
Gene Ontology
ID GO:0004575
description alkaline neutral invertase cinv2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_110 0.0 - - PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Citrus sinensis]
2 Hb_007483_110 0.3276942531 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1-like [Populus euphratica]
3 Hb_103604_010 0.3363578347 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_003197_070 0.3504012747 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
5 Hb_001842_030 0.3577081486 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_000215_370 0.3618566097 - - myoinositol oxygenase, putative [Ricinus communis]
7 Hb_006921_040 0.3677847261 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
8 Hb_000599_320 0.3738552016 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
9 Hb_002681_030 0.3757005164 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
10 Hb_000367_070 0.3764207767 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
11 Hb_000009_540 0.3838023764 - - hypothetical protein JCGZ_12303 [Jatropha curcas]
12 Hb_000108_060 0.3842247635 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
13 Hb_001195_180 0.3865793562 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
14 Hb_000025_170 0.3870446992 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000500_120 0.3908489725 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
16 Hb_002518_060 0.3997289336 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
17 Hb_000703_040 0.3999399852 - - hypothetical protein RCOM_1177160 [Ricinus communis]
18 Hb_002150_060 0.4026116379 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
19 Hb_006452_220 0.4029113769 - - PREDICTED: uncharacterized protein LOC105635043 [Jatropha curcas]
20 Hb_000008_380 0.4072336564 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000453_110 Hb_000453_110 Hb_007483_110 Hb_007483_110 Hb_000453_110--Hb_007483_110 Hb_103604_010 Hb_103604_010 Hb_000453_110--Hb_103604_010 Hb_003197_070 Hb_003197_070 Hb_000453_110--Hb_003197_070 Hb_001842_030 Hb_001842_030 Hb_000453_110--Hb_001842_030 Hb_000215_370 Hb_000215_370 Hb_000453_110--Hb_000215_370 Hb_006921_040 Hb_006921_040 Hb_000453_110--Hb_006921_040 Hb_002681_030 Hb_002681_030 Hb_007483_110--Hb_002681_030 Hb_000684_240 Hb_000684_240 Hb_007483_110--Hb_000684_240 Hb_010098_070 Hb_010098_070 Hb_007483_110--Hb_010098_070 Hb_184212_010 Hb_184212_010 Hb_007483_110--Hb_184212_010 Hb_096346_010 Hb_096346_010 Hb_007483_110--Hb_096346_010 Hb_003893_040 Hb_003893_040 Hb_007483_110--Hb_003893_040 Hb_012338_020 Hb_012338_020 Hb_103604_010--Hb_012338_020 Hb_001190_090 Hb_001190_090 Hb_103604_010--Hb_001190_090 Hb_007547_020 Hb_007547_020 Hb_103604_010--Hb_007547_020 Hb_002118_040 Hb_002118_040 Hb_103604_010--Hb_002118_040 Hb_001391_140 Hb_001391_140 Hb_103604_010--Hb_001391_140 Hb_000108_060 Hb_000108_060 Hb_003197_070--Hb_000108_060 Hb_000302_350 Hb_000302_350 Hb_003197_070--Hb_000302_350 Hb_007432_010 Hb_007432_010 Hb_003197_070--Hb_007432_010 Hb_000111_440 Hb_000111_440 Hb_003197_070--Hb_000111_440 Hb_000740_020 Hb_000740_020 Hb_003197_070--Hb_000740_020 Hb_003197_070--Hb_001842_030 Hb_062038_010 Hb_062038_010 Hb_001842_030--Hb_062038_010 Hb_000612_040 Hb_000612_040 Hb_001842_030--Hb_000612_040 Hb_007553_020 Hb_007553_020 Hb_001842_030--Hb_007553_020 Hb_002631_300 Hb_002631_300 Hb_001842_030--Hb_002631_300 Hb_000155_090 Hb_000155_090 Hb_001842_030--Hb_000155_090 Hb_002686_180 Hb_002686_180 Hb_001842_030--Hb_002686_180 Hb_001946_350 Hb_001946_350 Hb_000215_370--Hb_001946_350 Hb_002722_010 Hb_002722_010 Hb_000215_370--Hb_002722_010 Hb_002518_060 Hb_002518_060 Hb_000215_370--Hb_002518_060 Hb_000544_160 Hb_000544_160 Hb_000215_370--Hb_000544_160 Hb_079751_010 Hb_079751_010 Hb_000215_370--Hb_079751_010 Hb_000025_170 Hb_000025_170 Hb_000215_370--Hb_000025_170 Hb_006921_040--Hb_000544_160 Hb_000107_470 Hb_000107_470 Hb_006921_040--Hb_000107_470 Hb_001366_120 Hb_001366_120 Hb_006921_040--Hb_001366_120 Hb_002102_020 Hb_002102_020 Hb_006921_040--Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_006921_040--Hb_010174_080 Hb_000181_410 Hb_000181_410 Hb_006921_040--Hb_000181_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0455945 0 0.0394539 0.0302497 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0468721 0.0440993 0 0

CAGE analysis