Hb_000215_370

Information

Type -
Description -
Location Contig215: 309896-312101
Sequence    

Annotation

kegg
ID rcu:RCOM_1048680
description myoinositol oxygenase, putative (EC:1.13.99.1)
nr
ID XP_002514185.1
description myoinositol oxygenase, putative [Ricinus communis]
swissprot
ID Q8H1S0
description Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MIOX4 PE=2 SV=1
trembl
ID B9RKE1
description Myoinositol oxygenase, putative OS=Ricinus communis GN=RCOM_1048680 PE=4 SV=1
Gene Ontology
ID GO:0005737
description inositol oxygenase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22216: 309888-312087
cDNA
(Sanger)
(ID:Location)		 032_B23.ab1: 310885-312099 , 034_F14.ab1: 310471-312099 , 034_P03.ab1: 310632-312099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_370 0.0 - - myoinositol oxygenase, putative [Ricinus communis]
2 Hb_001946_350 0.2597080109 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
3 Hb_002722_010 0.2937053166 - - Disease resistance response protein, putative [Ricinus communis]
4 Hb_002518_060 0.2946180703 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
5 Hb_000544_160 0.2969398276 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
6 Hb_079751_010 0.2975243734 - - r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_000025_170 0.3000453249 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000088_220 0.3003874019 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
9 Hb_003897_020 0.3142740816 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
10 Hb_000679_120 0.3151743484 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
11 Hb_000030_160 0.3169312355 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
12 Hb_005725_200 0.3188917509 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
13 Hb_001545_070 0.326154596 - - conserved hypothetical protein [Ricinus communis]
14 Hb_032202_150 0.3328416859 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
15 Hb_000329_480 0.3367095369 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 4 [Jatropha curcas]
16 Hb_010515_030 0.3380205108 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
17 Hb_007943_060 0.3403001933 - - Rop5 [Hevea brasiliensis]
18 Hb_089889_010 0.3425242229 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
19 Hb_005725_150 0.3450968977 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
20 Hb_011671_190 0.3456387664 - - Nodulation receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000215_370 Hb_000215_370 Hb_001946_350 Hb_001946_350 Hb_000215_370--Hb_001946_350 Hb_002722_010 Hb_002722_010 Hb_000215_370--Hb_002722_010 Hb_002518_060 Hb_002518_060 Hb_000215_370--Hb_002518_060 Hb_000544_160 Hb_000544_160 Hb_000215_370--Hb_000544_160 Hb_079751_010 Hb_079751_010 Hb_000215_370--Hb_079751_010 Hb_000025_170 Hb_000025_170 Hb_000215_370--Hb_000025_170 Hb_005725_200 Hb_005725_200 Hb_001946_350--Hb_005725_200 Hb_001946_350--Hb_000025_170 Hb_000088_220 Hb_000088_220 Hb_001946_350--Hb_000088_220 Hb_005725_150 Hb_005725_150 Hb_001946_350--Hb_005725_150 Hb_003399_100 Hb_003399_100 Hb_001946_350--Hb_003399_100 Hb_000080_160 Hb_000080_160 Hb_002722_010--Hb_000080_160 Hb_002722_010--Hb_000544_160 Hb_010712_070 Hb_010712_070 Hb_002722_010--Hb_010712_070 Hb_000030_160 Hb_000030_160 Hb_002722_010--Hb_000030_160 Hb_078897_010 Hb_078897_010 Hb_002722_010--Hb_078897_010 Hb_021650_020 Hb_021650_020 Hb_002722_010--Hb_021650_020 Hb_002681_030 Hb_002681_030 Hb_002518_060--Hb_002681_030 Hb_000421_180 Hb_000421_180 Hb_002518_060--Hb_000421_180 Hb_000708_040 Hb_000708_040 Hb_002518_060--Hb_000708_040 Hb_085226_010 Hb_085226_010 Hb_002518_060--Hb_085226_010 Hb_000684_240 Hb_000684_240 Hb_002518_060--Hb_000684_240 Hb_000544_160--Hb_078897_010 Hb_000544_160--Hb_010712_070 Hb_006921_040 Hb_006921_040 Hb_000544_160--Hb_006921_040 Hb_000107_470 Hb_000107_470 Hb_000544_160--Hb_000107_470 Hb_001366_120 Hb_001366_120 Hb_000544_160--Hb_001366_120 Hb_010515_030 Hb_010515_030 Hb_079751_010--Hb_010515_030 Hb_079751_010--Hb_002722_010 Hb_134015_010 Hb_134015_010 Hb_079751_010--Hb_134015_010 Hb_079751_010--Hb_000544_160 Hb_079751_010--Hb_000080_160 Hb_000878_140 Hb_000878_140 Hb_000025_170--Hb_000878_140 Hb_003581_180 Hb_003581_180 Hb_000025_170--Hb_003581_180 Hb_000025_170--Hb_005725_150 Hb_007904_250 Hb_007904_250 Hb_000025_170--Hb_007904_250 Hb_001890_020 Hb_001890_020 Hb_000025_170--Hb_001890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.88957 0.201768 13.6439 2.74914 0 0.122083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.263951 1.66094 6.09321 2.1236 0.92731

CAGE analysis