Hb_079751_010

Information

Type -
Description -
Location Contig79751: 2-842
Sequence    

Annotation

kegg
ID rcu:RCOM_0204890
description r2r3-myb transcription factor, putative
nr
ID XP_002527968.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9LX82
description Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1
trembl
ID B9SPP9
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0204890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079751_010 0.0 - - r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_010515_030 0.2816138536 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
3 Hb_000215_370 0.2975243734 - - myoinositol oxygenase, putative [Ricinus communis]
4 Hb_002722_010 0.3090426315 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_134015_010 0.3135291982 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
6 Hb_000544_160 0.3163968022 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
7 Hb_000080_160 0.3324780736 - - Peroxin 13 [Theobroma cacao]
8 Hb_005656_030 0.3435455187 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_104812_020 0.3517463901 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_000107_470 0.3538526727 - - cellulose synthase, putative [Ricinus communis]
11 Hb_000088_220 0.359035351 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
12 Hb_001946_350 0.3635784169 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
13 Hb_006921_040 0.3638394287 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
14 Hb_078897_010 0.3766851401 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
15 Hb_002311_060 0.3770109299 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
16 Hb_002045_050 0.3804476615 - - -
17 Hb_002518_060 0.3820231669 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
18 Hb_006472_070 0.3850550817 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
19 Hb_011671_170 0.3853309045 - - PREDICTED: protein DYAD [Jatropha curcas]
20 Hb_001366_120 0.3885416969 - - unknown [Zea mays]

Gene co-expression network

sample Hb_079751_010 Hb_079751_010 Hb_010515_030 Hb_010515_030 Hb_079751_010--Hb_010515_030 Hb_000215_370 Hb_000215_370 Hb_079751_010--Hb_000215_370 Hb_002722_010 Hb_002722_010 Hb_079751_010--Hb_002722_010 Hb_134015_010 Hb_134015_010 Hb_079751_010--Hb_134015_010 Hb_000544_160 Hb_000544_160 Hb_079751_010--Hb_000544_160 Hb_000080_160 Hb_000080_160 Hb_079751_010--Hb_000080_160 Hb_001221_280 Hb_001221_280 Hb_010515_030--Hb_001221_280 Hb_002157_200 Hb_002157_200 Hb_010515_030--Hb_002157_200 Hb_000856_160 Hb_000856_160 Hb_010515_030--Hb_000856_160 Hb_010515_030--Hb_000215_370 Hb_005656_030 Hb_005656_030 Hb_010515_030--Hb_005656_030 Hb_001946_350 Hb_001946_350 Hb_000215_370--Hb_001946_350 Hb_000215_370--Hb_002722_010 Hb_002518_060 Hb_002518_060 Hb_000215_370--Hb_002518_060 Hb_000215_370--Hb_000544_160 Hb_000025_170 Hb_000025_170 Hb_000215_370--Hb_000025_170 Hb_002722_010--Hb_000080_160 Hb_002722_010--Hb_000544_160 Hb_010712_070 Hb_010712_070 Hb_002722_010--Hb_010712_070 Hb_000030_160 Hb_000030_160 Hb_002722_010--Hb_000030_160 Hb_078897_010 Hb_078897_010 Hb_002722_010--Hb_078897_010 Hb_021650_020 Hb_021650_020 Hb_002722_010--Hb_021650_020 Hb_002311_060 Hb_002311_060 Hb_134015_010--Hb_002311_060 Hb_004228_090 Hb_004228_090 Hb_134015_010--Hb_004228_090 Hb_021576_020 Hb_021576_020 Hb_134015_010--Hb_021576_020 Hb_134015_010--Hb_000080_160 Hb_032717_070 Hb_032717_070 Hb_134015_010--Hb_032717_070 Hb_000544_160--Hb_078897_010 Hb_000544_160--Hb_010712_070 Hb_006921_040 Hb_006921_040 Hb_000544_160--Hb_006921_040 Hb_000107_470 Hb_000107_470 Hb_000544_160--Hb_000107_470 Hb_001366_120 Hb_001366_120 Hb_000544_160--Hb_001366_120 Hb_006472_080 Hb_006472_080 Hb_000080_160--Hb_006472_080 Hb_000080_160--Hb_021650_020 Hb_000618_090 Hb_000618_090 Hb_000080_160--Hb_000618_090 Hb_003994_130 Hb_003994_130 Hb_000080_160--Hb_003994_130 Hb_001021_070 Hb_001021_070 Hb_000080_160--Hb_001021_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272927 0 0.359341 0.0625732 0.0521246 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.325493 0.156838 0

CAGE analysis