Hb_005656_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5656: 16629-17581
Sequence    

Annotation

kegg
ID rcu:RCOM_0204890
description r2r3-myb transcription factor, putative
nr
ID XP_002527968.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9FJA2
description Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1
trembl
ID B9SPP9
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0204890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_030 0.0 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_003159_100 0.1874478353 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_000413_290 0.2899281515 - - -
4 Hb_000107_470 0.3228910575 - - cellulose synthase, putative [Ricinus communis]
5 Hb_001913_020 0.3273091819 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000181_410 0.339157046 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010515_030 0.3394375749 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
8 Hb_032264_080 0.3400000995 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
9 Hb_079751_010 0.3435455187 - - r2r3-myb transcription factor, putative [Ricinus communis]
10 Hb_010366_010 0.3468204521 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_006472_070 0.3544465974 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
12 Hb_004193_010 0.3584439052 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
13 Hb_000820_160 0.3656432135 - - -
14 Hb_032990_020 0.3674849556 - - conserved hypothetical protein [Ricinus communis]
15 Hb_163839_010 0.3730322391 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_008453_130 0.3759652676 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
17 Hb_000088_220 0.3771441263 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
18 Hb_001016_140 0.3800600879 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
19 Hb_002733_010 0.3802403406 - - -
20 Hb_012754_010 0.3832137287 - - -

Gene co-expression network

sample Hb_005656_030 Hb_005656_030 Hb_003159_100 Hb_003159_100 Hb_005656_030--Hb_003159_100 Hb_000413_290 Hb_000413_290 Hb_005656_030--Hb_000413_290 Hb_000107_470 Hb_000107_470 Hb_005656_030--Hb_000107_470 Hb_001913_020 Hb_001913_020 Hb_005656_030--Hb_001913_020 Hb_000181_410 Hb_000181_410 Hb_005656_030--Hb_000181_410 Hb_010515_030 Hb_010515_030 Hb_005656_030--Hb_010515_030 Hb_004524_070 Hb_004524_070 Hb_003159_100--Hb_004524_070 Hb_003159_100--Hb_000413_290 Hb_000589_370 Hb_000589_370 Hb_003159_100--Hb_000589_370 Hb_003159_100--Hb_001913_020 Hb_032990_020 Hb_032990_020 Hb_003159_100--Hb_032990_020 Hb_000413_290--Hb_000181_410 Hb_001300_100 Hb_001300_100 Hb_000413_290--Hb_001300_100 Hb_010366_010 Hb_010366_010 Hb_000413_290--Hb_010366_010 Hb_007333_030 Hb_007333_030 Hb_000413_290--Hb_007333_030 Hb_000413_290--Hb_000107_470 Hb_000107_470--Hb_000181_410 Hb_000544_160 Hb_000544_160 Hb_000107_470--Hb_000544_160 Hb_004994_130 Hb_004994_130 Hb_000107_470--Hb_004994_130 Hb_004453_100 Hb_004453_100 Hb_000107_470--Hb_004453_100 Hb_006921_040 Hb_006921_040 Hb_000107_470--Hb_006921_040 Hb_007603_020 Hb_007603_020 Hb_000107_470--Hb_007603_020 Hb_002733_010 Hb_002733_010 Hb_001913_020--Hb_002733_010 Hb_001221_270 Hb_001221_270 Hb_001913_020--Hb_001221_270 Hb_001913_020--Hb_000413_290 Hb_010712_070 Hb_010712_070 Hb_001913_020--Hb_010712_070 Hb_002157_200 Hb_002157_200 Hb_001913_020--Hb_002157_200 Hb_000181_410--Hb_007603_020 Hb_000181_410--Hb_004994_130 Hb_000904_130 Hb_000904_130 Hb_000181_410--Hb_000904_130 Hb_000152_510 Hb_000152_510 Hb_000181_410--Hb_000152_510 Hb_163839_010 Hb_163839_010 Hb_000181_410--Hb_163839_010 Hb_079751_010 Hb_079751_010 Hb_010515_030--Hb_079751_010 Hb_001221_280 Hb_001221_280 Hb_010515_030--Hb_001221_280 Hb_010515_030--Hb_002157_200 Hb_000856_160 Hb_000856_160 Hb_010515_030--Hb_000856_160 Hb_000215_370 Hb_000215_370 Hb_010515_030--Hb_000215_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0753666 0.0676034 0.182446 0 0.0312931 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.108353 0.0245697 0

CAGE analysis