Hb_001913_020

Information

Type -
Description -
Location Contig1913: 10775-11668
Sequence    

Annotation

kegg
ID rcu:RCOM_0606770
description hypothetical protein
nr
ID XP_002530972.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LQQ0
description Dirigent protein 25 OS=Arabidopsis thaliana GN=DIR25 PE=2 SV=1
trembl
ID B9SYA3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0606770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19097: 9776-9961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001913_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002733_010 0.2464797854 - - -
3 Hb_001221_270 0.3101679499 - - -
4 Hb_005656_030 0.3273091819 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_000413_290 0.3298689281 - - -
6 Hb_010712_070 0.3344573123 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
7 Hb_002157_200 0.3370532308 - - hypothetical protein VITISV_040170 [Vitis vinifera]
8 Hb_000107_470 0.3395712655 - - cellulose synthase, putative [Ricinus communis]
9 Hb_000544_160 0.3539572903 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
10 Hb_089140_060 0.3553265131 - - Uncharacterized protein TCM_037529 [Theobroma cacao]
11 Hb_003159_100 0.3562306025 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
12 Hb_002929_130 0.3576179783 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_000922_420 0.3608712307 - - glutaredoxin-1, grx1, putative [Ricinus communis]
14 Hb_004994_130 0.3654270595 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
15 Hb_078897_010 0.3657689027 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
16 Hb_008453_130 0.3665305807 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
17 Hb_001300_210 0.3688744036 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
18 Hb_006495_080 0.3701451793 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
19 Hb_004453_100 0.3709043103 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006230_040 0.3720166139 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001913_020 Hb_001913_020 Hb_002733_010 Hb_002733_010 Hb_001913_020--Hb_002733_010 Hb_001221_270 Hb_001221_270 Hb_001913_020--Hb_001221_270 Hb_005656_030 Hb_005656_030 Hb_001913_020--Hb_005656_030 Hb_000413_290 Hb_000413_290 Hb_001913_020--Hb_000413_290 Hb_010712_070 Hb_010712_070 Hb_001913_020--Hb_010712_070 Hb_002157_200 Hb_002157_200 Hb_001913_020--Hb_002157_200 Hb_002733_010--Hb_001221_270 Hb_002102_020 Hb_002102_020 Hb_002733_010--Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_002733_010--Hb_010174_080 Hb_120155_010 Hb_120155_010 Hb_002733_010--Hb_120155_010 Hb_000062_350 Hb_000062_350 Hb_002733_010--Hb_000062_350 Hb_108706_010 Hb_108706_010 Hb_001221_270--Hb_108706_010 Hb_159921_010 Hb_159921_010 Hb_001221_270--Hb_159921_010 Hb_004079_020 Hb_004079_020 Hb_001221_270--Hb_004079_020 Hb_078897_010 Hb_078897_010 Hb_001221_270--Hb_078897_010 Hb_003159_100 Hb_003159_100 Hb_005656_030--Hb_003159_100 Hb_005656_030--Hb_000413_290 Hb_000107_470 Hb_000107_470 Hb_005656_030--Hb_000107_470 Hb_000181_410 Hb_000181_410 Hb_005656_030--Hb_000181_410 Hb_010515_030 Hb_010515_030 Hb_005656_030--Hb_010515_030 Hb_000413_290--Hb_000181_410 Hb_001300_100 Hb_001300_100 Hb_000413_290--Hb_001300_100 Hb_010366_010 Hb_010366_010 Hb_000413_290--Hb_010366_010 Hb_007333_030 Hb_007333_030 Hb_000413_290--Hb_007333_030 Hb_000413_290--Hb_000107_470 Hb_000544_160 Hb_000544_160 Hb_010712_070--Hb_000544_160 Hb_010712_070--Hb_078897_010 Hb_002722_010 Hb_002722_010 Hb_010712_070--Hb_002722_010 Hb_102632_010 Hb_102632_010 Hb_010712_070--Hb_102632_010 Hb_000030_160 Hb_000030_160 Hb_010712_070--Hb_000030_160 Hb_007765_070 Hb_007765_070 Hb_010712_070--Hb_007765_070 Hb_003897_020 Hb_003897_020 Hb_002157_200--Hb_003897_020 Hb_003605_140 Hb_003605_140 Hb_002157_200--Hb_003605_140 Hb_001049_080 Hb_001049_080 Hb_002157_200--Hb_001049_080 Hb_000392_200 Hb_000392_200 Hb_002157_200--Hb_000392_200 Hb_000010_450 Hb_000010_450 Hb_002157_200--Hb_000010_450 Hb_002157_200--Hb_010515_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362895 0.0850349 0.639045 0 0.0255315 0.222542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.251506 0.0370375 0

CAGE analysis