Hb_003897_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3897: 20159-21988
Sequence    

Annotation

kegg
ID rcu:RCOM_1446000
description transcription factor, putative
nr
ID XP_002512874.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O22800
description Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2
trembl
ID B9RH15
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1446000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39047: 20606-20959 , PASA_asmbl_39048: 21802-22146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003897_020 0.0 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
2 Hb_000679_120 0.2475219428 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
3 Hb_002157_200 0.2787260744 - - hypothetical protein VITISV_040170 [Vitis vinifera]
4 Hb_086922_010 0.2958617835 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_007632_150 0.2975123298 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005725_200 0.2981937827 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
7 Hb_135811_030 0.3005257283 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
8 Hb_069877_010 0.301395102 - - chaperone protein DNAj, putative [Ricinus communis]
9 Hb_000429_060 0.305190766 - - conserved hypothetical protein [Ricinus communis]
10 Hb_113444_010 0.3100327024 - - -
11 Hb_002641_040 0.3124815389 - - class III peroxidase [Populus trichocarpa]
12 Hb_001959_230 0.3128295394 - - PREDICTED: uncharacterized protein LOC105638436 [Jatropha curcas]
13 Hb_000215_370 0.3142740816 - - myoinositol oxygenase, putative [Ricinus communis]
14 Hb_174245_020 0.3198419332 - - -
15 Hb_001049_080 0.3281025841 - - -
16 Hb_120820_010 0.3348575223 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
17 Hb_003861_030 0.3357195274 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
18 Hb_001761_110 0.3468228438 - - Contains similarity to Cf-2.2 gene gb
19 Hb_131101_010 0.3490077287 - - -
20 Hb_005743_090 0.3524140978 - - -

Gene co-expression network

sample Hb_003897_020 Hb_003897_020 Hb_000679_120 Hb_000679_120 Hb_003897_020--Hb_000679_120 Hb_002157_200 Hb_002157_200 Hb_003897_020--Hb_002157_200 Hb_086922_010 Hb_086922_010 Hb_003897_020--Hb_086922_010 Hb_007632_150 Hb_007632_150 Hb_003897_020--Hb_007632_150 Hb_005725_200 Hb_005725_200 Hb_003897_020--Hb_005725_200 Hb_135811_030 Hb_135811_030 Hb_003897_020--Hb_135811_030 Hb_000679_120--Hb_005725_200 Hb_000321_080 Hb_000321_080 Hb_000679_120--Hb_000321_080 Hb_002641_040 Hb_002641_040 Hb_000679_120--Hb_002641_040 Hb_001431_110 Hb_001431_110 Hb_000679_120--Hb_001431_110 Hb_002067_010 Hb_002067_010 Hb_000679_120--Hb_002067_010 Hb_003605_140 Hb_003605_140 Hb_002157_200--Hb_003605_140 Hb_001049_080 Hb_001049_080 Hb_002157_200--Hb_001049_080 Hb_000392_200 Hb_000392_200 Hb_002157_200--Hb_000392_200 Hb_000010_450 Hb_000010_450 Hb_002157_200--Hb_000010_450 Hb_010515_030 Hb_010515_030 Hb_002157_200--Hb_010515_030 Hb_086922_010--Hb_007632_150 Hb_086922_010--Hb_135811_030 Hb_069877_010 Hb_069877_010 Hb_086922_010--Hb_069877_010 Hb_000429_060 Hb_000429_060 Hb_086922_010--Hb_000429_060 Hb_113444_010 Hb_113444_010 Hb_086922_010--Hb_113444_010 Hb_086922_010--Hb_001049_080 Hb_007632_150--Hb_135811_030 Hb_007632_150--Hb_069877_010 Hb_007632_150--Hb_001049_080 Hb_007632_150--Hb_000429_060 Hb_007632_150--Hb_113444_010 Hb_000088_220 Hb_000088_220 Hb_005725_200--Hb_000088_220 Hb_005725_200--Hb_000321_080 Hb_001946_350 Hb_001946_350 Hb_005725_200--Hb_001946_350 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050 Hb_135811_030--Hb_069877_010 Hb_135811_030--Hb_000429_060 Hb_135811_030--Hb_113444_010 Hb_001959_230 Hb_001959_230 Hb_135811_030--Hb_001959_230 Hb_174245_020 Hb_174245_020 Hb_135811_030--Hb_174245_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.565811 0 1.19086 0.0621738 0.0482716 0.014095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0576251 0.16147 0 0

CAGE analysis