Hb_001431_110

Information

Type -
Description -
Location Contig1431: 121625-123272
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12290g
description POPTRDRAFT_911228; glycerol-3-phosphate transporter family protein
nr
ID XP_002324576.1
description glycerol-3-phosphate transporter family protein [Populus trichocarpa]
swissprot
ID Q9SL56
description Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2
trembl
ID B9IML0
description Glycerol-3-phosphate transporter family protein OS=Populus trichocarpa GN=POPTR_0018s12290g PE=4 SV=1
Gene Ontology
ID GO:0006810
description glycerol-3-phosphate transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001431_110 0.0 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
2 Hb_003078_060 0.2625024234 - - 60S ribosomal protein L32, putative [Ricinus communis]
3 Hb_000679_120 0.2644623707 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
4 Hb_003750_070 0.2664788493 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
5 Hb_005489_030 0.2681007755 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
6 Hb_000321_080 0.2696954742 - - histone H4 [Zea mays]
7 Hb_004545_020 0.2708226684 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
8 Hb_001016_010 0.2722655419 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004162_230 0.2736293212 - - PREDICTED: histone H2B [Jatropha curcas]
10 Hb_005725_200 0.2826901646 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
11 Hb_000181_190 0.2912140796 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
12 Hb_032208_020 0.3023497761 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
13 Hb_000139_490 0.3060005243 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
14 Hb_002259_200 0.3062651078 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005679_080 0.3073088253 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
16 Hb_001300_210 0.3147402796 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
17 Hb_044662_050 0.3173915116 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
18 Hb_002411_060 0.3191763368 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
19 Hb_036790_030 0.3211400835 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
20 Hb_000739_270 0.3235158064 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]

Gene co-expression network

sample Hb_001431_110 Hb_001431_110 Hb_003078_060 Hb_003078_060 Hb_001431_110--Hb_003078_060 Hb_000679_120 Hb_000679_120 Hb_001431_110--Hb_000679_120 Hb_003750_070 Hb_003750_070 Hb_001431_110--Hb_003750_070 Hb_005489_030 Hb_005489_030 Hb_001431_110--Hb_005489_030 Hb_000321_080 Hb_000321_080 Hb_001431_110--Hb_000321_080 Hb_004545_020 Hb_004545_020 Hb_001431_110--Hb_004545_020 Hb_000139_490 Hb_000139_490 Hb_003078_060--Hb_000139_490 Hb_157022_030 Hb_157022_030 Hb_003078_060--Hb_157022_030 Hb_004162_230 Hb_004162_230 Hb_003078_060--Hb_004162_230 Hb_000926_230 Hb_000926_230 Hb_003078_060--Hb_000926_230 Hb_005679_080 Hb_005679_080 Hb_003078_060--Hb_005679_080 Hb_005725_200 Hb_005725_200 Hb_000679_120--Hb_005725_200 Hb_003897_020 Hb_003897_020 Hb_000679_120--Hb_003897_020 Hb_000679_120--Hb_000321_080 Hb_002641_040 Hb_002641_040 Hb_000679_120--Hb_002641_040 Hb_002067_010 Hb_002067_010 Hb_000679_120--Hb_002067_010 Hb_032208_020 Hb_032208_020 Hb_003750_070--Hb_032208_020 Hb_003750_070--Hb_004545_020 Hb_004228_080 Hb_004228_080 Hb_003750_070--Hb_004228_080 Hb_000959_310 Hb_000959_310 Hb_003750_070--Hb_000959_310 Hb_003050_110 Hb_003050_110 Hb_003750_070--Hb_003050_110 Hb_000092_130 Hb_000092_130 Hb_003750_070--Hb_000092_130 Hb_001016_010 Hb_001016_010 Hb_005489_030--Hb_001016_010 Hb_127743_020 Hb_127743_020 Hb_005489_030--Hb_127743_020 Hb_001999_270 Hb_001999_270 Hb_005489_030--Hb_001999_270 Hb_006831_060 Hb_006831_060 Hb_005489_030--Hb_006831_060 Hb_005489_030--Hb_004545_020 Hb_000345_410 Hb_000345_410 Hb_000321_080--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000321_080--Hb_002007_280 Hb_044662_050 Hb_044662_050 Hb_000321_080--Hb_044662_050 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_002007_040 Hb_002007_040 Hb_000321_080--Hb_002007_040 Hb_008406_100 Hb_008406_100 Hb_000321_080--Hb_008406_100 Hb_001300_210 Hb_001300_210 Hb_004545_020--Hb_001300_210 Hb_002259_200 Hb_002259_200 Hb_004545_020--Hb_002259_200 Hb_001252_240 Hb_001252_240 Hb_004545_020--Hb_001252_240 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159392 0 0.58076 0.082672 0 0.0804709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139604 0.109766 0 0.044469 0

CAGE analysis