Hb_001999_270

Information

Type -
Description -
Location Contig1999: 230251-230697
Sequence    

Annotation

kegg
ID gmx:102666191
description uncharacterized LOC102666191
nr
ID XP_012085858.1
description PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID G7J801
description Uncharacterized protein OS=Medicago truncatula GN=MTR_3g064620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20047: 227226-229409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_270 0.0 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
2 Hb_015183_040 0.2529304981 - - -
3 Hb_105061_010 0.2718445204 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_034243_030 0.2774878443 - - B3 domain-containing protein [Medicago truncatula]
5 Hb_006831_060 0.2887396941 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
6 Hb_009083_040 0.3013813645 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
7 Hb_005489_030 0.3022765568 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
8 Hb_000212_480 0.3108578947 - - -
9 Hb_003992_010 0.3236647167 - - -
10 Hb_007229_010 0.3632121882 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
11 Hb_127743_020 0.3640175502 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
12 Hb_002461_050 0.3727481624 - - -
13 Hb_001431_110 0.3740109869 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
14 Hb_004491_020 0.3744901048 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
15 Hb_000264_150 0.374590871 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
16 Hb_001722_090 0.3763004574 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_001709_100 0.3763787234 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_004545_020 0.3789895812 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
19 Hb_001247_340 0.3794809605 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_153258_060 0.3870410232 - - -

Gene co-expression network

sample Hb_001999_270 Hb_001999_270 Hb_015183_040 Hb_015183_040 Hb_001999_270--Hb_015183_040 Hb_105061_010 Hb_105061_010 Hb_001999_270--Hb_105061_010 Hb_034243_030 Hb_034243_030 Hb_001999_270--Hb_034243_030 Hb_006831_060 Hb_006831_060 Hb_001999_270--Hb_006831_060 Hb_009083_040 Hb_009083_040 Hb_001999_270--Hb_009083_040 Hb_005489_030 Hb_005489_030 Hb_001999_270--Hb_005489_030 Hb_015183_040--Hb_034243_030 Hb_003992_010 Hb_003992_010 Hb_015183_040--Hb_003992_010 Hb_002461_050 Hb_002461_050 Hb_015183_040--Hb_002461_050 Hb_004491_020 Hb_004491_020 Hb_015183_040--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_015183_040--Hb_000264_150 Hb_004413_040 Hb_004413_040 Hb_105061_010--Hb_004413_040 Hb_105061_010--Hb_002461_050 Hb_126508_010 Hb_126508_010 Hb_105061_010--Hb_126508_010 Hb_105061_010--Hb_003992_010 Hb_000345_470 Hb_000345_470 Hb_105061_010--Hb_000345_470 Hb_034243_030--Hb_003992_010 Hb_034243_030--Hb_002461_050 Hb_034243_030--Hb_000345_470 Hb_034243_030--Hb_126508_010 Hb_007229_010 Hb_007229_010 Hb_006831_060--Hb_007229_010 Hb_000025_380 Hb_000025_380 Hb_006831_060--Hb_000025_380 Hb_153258_060 Hb_153258_060 Hb_006831_060--Hb_153258_060 Hb_006831_060--Hb_015183_040 Hb_006831_060--Hb_005489_030 Hb_000212_480 Hb_000212_480 Hb_009083_040--Hb_000212_480 Hb_000377_100 Hb_000377_100 Hb_009083_040--Hb_000377_100 Hb_004324_170 Hb_004324_170 Hb_009083_040--Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_009083_040--Hb_007545_040 Hb_162189_010 Hb_162189_010 Hb_009083_040--Hb_162189_010 Hb_001431_110 Hb_001431_110 Hb_005489_030--Hb_001431_110 Hb_001016_010 Hb_001016_010 Hb_005489_030--Hb_001016_010 Hb_127743_020 Hb_127743_020 Hb_005489_030--Hb_127743_020 Hb_004545_020 Hb_004545_020 Hb_005489_030--Hb_004545_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107039 0 0.350044 0 0 0.0987751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.25512 0 0 0 0

CAGE analysis