Hb_000264_150

Information

Type -
Description -
Location Contig264: 132297-132545
Sequence    

Annotation

kegg
ID brp:103870759
description uncharacterized LOC103870759
nr
ID XP_009147176.1
description PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
swissprot
ID -
description -
trembl
ID A0A078J205
description BnaC06g41320D protein OS=Brassica napus GN=BnaC06g41320D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_150 0.0 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
2 Hb_004491_020 0.0090352413 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
3 Hb_001722_090 0.0304617614 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
4 Hb_001709_100 0.0313160504 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_001247_340 0.0757615079 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_162189_010 0.1503120586 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_007545_040 0.1562483763 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
8 Hb_004324_170 0.1633511926 - - -
9 Hb_156850_010 0.2164305977 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
10 Hb_022680_020 0.256131987 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
11 Hb_011316_070 0.2589034652 - - acyltransferase, putative [Ricinus communis]
12 Hb_132840_040 0.288947219 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
13 Hb_015183_040 0.2910041101 - - -
14 Hb_000093_070 0.2981673256 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
15 Hb_087999_010 0.2988514409 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
16 Hb_000009_370 0.3037821008 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
17 Hb_028621_030 0.3167529439 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
18 Hb_011349_010 0.325150509 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
19 Hb_009078_040 0.3450971125 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_000025_380 0.3486154154 - - hypothetical protein JCGZ_22787 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_150 Hb_000264_150 Hb_004491_020 Hb_004491_020 Hb_000264_150--Hb_004491_020 Hb_001722_090 Hb_001722_090 Hb_000264_150--Hb_001722_090 Hb_001709_100 Hb_001709_100 Hb_000264_150--Hb_001709_100 Hb_001247_340 Hb_001247_340 Hb_000264_150--Hb_001247_340 Hb_162189_010 Hb_162189_010 Hb_000264_150--Hb_162189_010 Hb_007545_040 Hb_007545_040 Hb_000264_150--Hb_007545_040 Hb_004491_020--Hb_001722_090 Hb_004491_020--Hb_001709_100 Hb_004491_020--Hb_001247_340 Hb_004491_020--Hb_162189_010 Hb_004491_020--Hb_007545_040 Hb_001722_090--Hb_001709_100 Hb_001722_090--Hb_001247_340 Hb_001722_090--Hb_162189_010 Hb_001722_090--Hb_007545_040 Hb_001709_100--Hb_001247_340 Hb_001709_100--Hb_162189_010 Hb_001709_100--Hb_007545_040 Hb_001247_340--Hb_162189_010 Hb_001247_340--Hb_007545_040 Hb_004324_170 Hb_004324_170 Hb_001247_340--Hb_004324_170 Hb_162189_010--Hb_007545_040 Hb_162189_010--Hb_004324_170 Hb_156850_010 Hb_156850_010 Hb_162189_010--Hb_156850_010 Hb_132840_040 Hb_132840_040 Hb_162189_010--Hb_132840_040 Hb_007545_040--Hb_004324_170 Hb_007545_040--Hb_156850_010 Hb_007545_040--Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_007545_040--Hb_000093_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.910189 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.634222 0 0 0 0

CAGE analysis