Hb_004491_020

Information

Type -
Description -
Location Contig4491: 65538-75329
Sequence    

Annotation

kegg
ID rcu:RCOM_0305430
description heavy metal cation transport atpase, putative (EC:3.6.3.5)
nr
ID XP_012066829.1
description PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
swissprot
ID Q9SZW4
description Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1
trembl
ID A0A067LDS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04570 PE=3 SV=1
Gene Ontology
ID GO:0016021
description inactive cadmium zinc-transporting atpase hma3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004491_020 0.0 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
2 Hb_000264_150 0.0090352413 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
3 Hb_001722_090 0.039492937 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
4 Hb_001709_100 0.0403470194 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_001247_340 0.0667425102 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_162189_010 0.1413437679 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_007545_040 0.1472855876 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
8 Hb_004324_170 0.1543952742 - - -
9 Hb_156850_010 0.2075361384 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
10 Hb_022680_020 0.2556933066 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
11 Hb_011316_070 0.2676542344 - - acyltransferase, putative [Ricinus communis]
12 Hb_132840_040 0.2801674349 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
13 Hb_000093_070 0.2894048807 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
14 Hb_087999_010 0.2900903088 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
15 Hb_015183_040 0.2904931661 - - -
16 Hb_000009_370 0.3092773833 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
17 Hb_011349_010 0.3210225386 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
18 Hb_028621_030 0.3222822183 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
19 Hb_009078_040 0.3364335773 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_009083_040 0.3502390653 - - hypothetical protein JCGZ_12563 [Jatropha curcas]

Gene co-expression network

sample Hb_004491_020 Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_004491_020--Hb_000264_150 Hb_001722_090 Hb_001722_090 Hb_004491_020--Hb_001722_090 Hb_001709_100 Hb_001709_100 Hb_004491_020--Hb_001709_100 Hb_001247_340 Hb_001247_340 Hb_004491_020--Hb_001247_340 Hb_162189_010 Hb_162189_010 Hb_004491_020--Hb_162189_010 Hb_007545_040 Hb_007545_040 Hb_004491_020--Hb_007545_040 Hb_000264_150--Hb_001722_090 Hb_000264_150--Hb_001709_100 Hb_000264_150--Hb_001247_340 Hb_000264_150--Hb_162189_010 Hb_000264_150--Hb_007545_040 Hb_001722_090--Hb_001709_100 Hb_001722_090--Hb_001247_340 Hb_001722_090--Hb_162189_010 Hb_001722_090--Hb_007545_040 Hb_001709_100--Hb_001247_340 Hb_001709_100--Hb_162189_010 Hb_001709_100--Hb_007545_040 Hb_001247_340--Hb_162189_010 Hb_001247_340--Hb_007545_040 Hb_004324_170 Hb_004324_170 Hb_001247_340--Hb_004324_170 Hb_162189_010--Hb_007545_040 Hb_162189_010--Hb_004324_170 Hb_156850_010 Hb_156850_010 Hb_162189_010--Hb_156850_010 Hb_132840_040 Hb_132840_040 Hb_162189_010--Hb_132840_040 Hb_007545_040--Hb_004324_170 Hb_007545_040--Hb_156850_010 Hb_007545_040--Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_007545_040--Hb_000093_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0192723 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0140214 0 0 0 0

CAGE analysis