Hb_132840_040

Information

Type -
Description -
Location Contig132840: 30020-32391
Sequence    

Annotation

kegg
ID rcu:RCOM_1340230
description 1-aminocyclopropane-1-carboxylate oxidase, putative (EC:1.14.11.9)
nr
ID XP_002515091.1
description 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
swissprot
ID Q05963
description Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1
trembl
ID B9RMV2
description 1-aminocyclopropane-1-carboxylate oxidase, putative OS=Ricinus communis GN=RCOM_1340230 PE=3 SV=1
Gene Ontology
ID GO:0016706
description flavonol synthase flavanone 3-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_040 0.0 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
2 Hb_000093_070 0.0095554834 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
3 Hb_087999_010 0.0102655685 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
4 Hb_009078_040 0.0586406595 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_156850_010 0.0742906179 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
6 Hb_004324_170 0.1278246088 - - -
7 Hb_007545_040 0.1349404212 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
8 Hb_162189_010 0.140879367 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_001247_340 0.2148562272 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_004491_020 0.2801674349 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
11 Hb_000264_150 0.288947219 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
12 Hb_011349_010 0.3074386981 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
13 Hb_000574_500 0.3108432422 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
14 Hb_001722_090 0.31843458 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
15 Hb_001709_100 0.319259005 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_009083_040 0.3398505106 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
17 Hb_001205_010 0.3400220557 - - -
18 Hb_000313_020 0.3427140028 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
19 Hb_022958_020 0.3566776719 - - PREDICTED: B2 protein-like [Jatropha curcas]
20 Hb_022680_020 0.3665546592 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_040 Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_132840_040--Hb_000093_070 Hb_087999_010 Hb_087999_010 Hb_132840_040--Hb_087999_010 Hb_009078_040 Hb_009078_040 Hb_132840_040--Hb_009078_040 Hb_156850_010 Hb_156850_010 Hb_132840_040--Hb_156850_010 Hb_004324_170 Hb_004324_170 Hb_132840_040--Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_132840_040--Hb_007545_040 Hb_000093_070--Hb_087999_010 Hb_000093_070--Hb_009078_040 Hb_000093_070--Hb_156850_010 Hb_000093_070--Hb_004324_170 Hb_000093_070--Hb_007545_040 Hb_087999_010--Hb_009078_040 Hb_087999_010--Hb_156850_010 Hb_087999_010--Hb_004324_170 Hb_087999_010--Hb_007545_040 Hb_009078_040--Hb_156850_010 Hb_009078_040--Hb_004324_170 Hb_009078_040--Hb_007545_040 Hb_156850_010--Hb_004324_170 Hb_156850_010--Hb_007545_040 Hb_162189_010 Hb_162189_010 Hb_156850_010--Hb_162189_010 Hb_004324_170--Hb_007545_040 Hb_004324_170--Hb_162189_010 Hb_001247_340 Hb_001247_340 Hb_004324_170--Hb_001247_340 Hb_007545_040--Hb_162189_010 Hb_007545_040--Hb_001247_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0161996 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0468809 0 0 0 0

CAGE analysis