Hb_000093_070

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig93: 97846-99585
Sequence    

Annotation

kegg
ID rcu:RCOM_1620070
description Protein CRABS CLAW, putative
nr
ID XP_002512055.1
description Protein CRABS CLAW, putative [Ricinus communis]
swissprot
ID Q8L925
description Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
trembl
ID B9REB6
description Protein CRABS CLAW, putative OS=Ricinus communis GN=RCOM_1620070 PE=4 SV=1
Gene Ontology
ID GO:0007275
description protein crabs claw-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_070 0.0 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
2 Hb_087999_010 0.0007101254 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
3 Hb_132840_040 0.0095554834 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
4 Hb_009078_040 0.0491022534 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_156850_010 0.0838155111 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
6 Hb_004324_170 0.1372994438 - - -
7 Hb_007545_040 0.1444071138 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
8 Hb_162189_010 0.1503390157 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_001247_340 0.224210695 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
10 Hb_004491_020 0.2894048807 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
11 Hb_000264_150 0.2981673256 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
12 Hb_000574_500 0.3077723162 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
13 Hb_011349_010 0.3110963237 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
14 Hb_001722_090 0.3275937126 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
15 Hb_001709_100 0.3284163721 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_001205_010 0.3401493929 - - -
17 Hb_000313_020 0.3425972397 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
18 Hb_009083_040 0.3431457095 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
19 Hb_022958_020 0.3565557643 - - PREDICTED: B2 protein-like [Jatropha curcas]
20 Hb_000007_050 0.3689428653 - - -

Gene co-expression network

sample Hb_000093_070 Hb_000093_070 Hb_087999_010 Hb_087999_010 Hb_000093_070--Hb_087999_010 Hb_132840_040 Hb_132840_040 Hb_000093_070--Hb_132840_040 Hb_009078_040 Hb_009078_040 Hb_000093_070--Hb_009078_040 Hb_156850_010 Hb_156850_010 Hb_000093_070--Hb_156850_010 Hb_004324_170 Hb_004324_170 Hb_000093_070--Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_000093_070--Hb_007545_040 Hb_087999_010--Hb_132840_040 Hb_087999_010--Hb_009078_040 Hb_087999_010--Hb_156850_010 Hb_087999_010--Hb_004324_170 Hb_087999_010--Hb_007545_040 Hb_132840_040--Hb_009078_040 Hb_132840_040--Hb_156850_010 Hb_132840_040--Hb_004324_170 Hb_132840_040--Hb_007545_040 Hb_009078_040--Hb_156850_010 Hb_009078_040--Hb_004324_170 Hb_009078_040--Hb_007545_040 Hb_156850_010--Hb_004324_170 Hb_156850_010--Hb_007545_040 Hb_162189_010 Hb_162189_010 Hb_156850_010--Hb_162189_010 Hb_004324_170--Hb_007545_040 Hb_004324_170--Hb_162189_010 Hb_001247_340 Hb_001247_340 Hb_004324_170--Hb_001247_340 Hb_007545_040--Hb_162189_010 Hb_007545_040--Hb_001247_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0363756 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11087 0 0 0 0

CAGE analysis