Hb_001247_340

Information

Type transcription factor
Description TF Family: M-type
Location Contig1247: 272402-273124
Sequence    

Annotation

kegg
ID rcu:RCOM_1708810
description mads box protein, putative
nr
ID XP_002520092.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q9FJK3
description Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1
trembl
ID B9S273
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_340 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_004491_020 0.0667425102 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
3 Hb_162189_010 0.0748460483 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_000264_150 0.0757615079 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
5 Hb_007545_040 0.0808185596 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
6 Hb_004324_170 0.0879671876 - - -
7 Hb_001722_090 0.1061347937 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
8 Hb_001709_100 0.106985837 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_156850_010 0.1414777482 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
10 Hb_132840_040 0.2148562272 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
11 Hb_000093_070 0.224210695 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
12 Hb_087999_010 0.2249050176 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
13 Hb_022680_020 0.2616157258 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
14 Hb_009078_040 0.2719210184 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
15 Hb_015183_040 0.2946438048 - - -
16 Hb_011349_010 0.2964441629 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
17 Hb_009083_040 0.3288146411 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
18 Hb_011316_070 0.3319020671 - - acyltransferase, putative [Ricinus communis]
19 Hb_000009_370 0.3535052098 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
20 Hb_028621_030 0.3665240985 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_340 Hb_001247_340 Hb_004491_020 Hb_004491_020 Hb_001247_340--Hb_004491_020 Hb_162189_010 Hb_162189_010 Hb_001247_340--Hb_162189_010 Hb_000264_150 Hb_000264_150 Hb_001247_340--Hb_000264_150 Hb_007545_040 Hb_007545_040 Hb_001247_340--Hb_007545_040 Hb_004324_170 Hb_004324_170 Hb_001247_340--Hb_004324_170 Hb_001722_090 Hb_001722_090 Hb_001247_340--Hb_001722_090 Hb_004491_020--Hb_000264_150 Hb_004491_020--Hb_001722_090 Hb_001709_100 Hb_001709_100 Hb_004491_020--Hb_001709_100 Hb_004491_020--Hb_162189_010 Hb_004491_020--Hb_007545_040 Hb_162189_010--Hb_007545_040 Hb_162189_010--Hb_004324_170 Hb_156850_010 Hb_156850_010 Hb_162189_010--Hb_156850_010 Hb_132840_040 Hb_132840_040 Hb_162189_010--Hb_132840_040 Hb_000264_150--Hb_001722_090 Hb_000264_150--Hb_001709_100 Hb_000264_150--Hb_162189_010 Hb_000264_150--Hb_007545_040 Hb_007545_040--Hb_004324_170 Hb_007545_040--Hb_156850_010 Hb_007545_040--Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_007545_040--Hb_000093_070 Hb_004324_170--Hb_156850_010 Hb_004324_170--Hb_132840_040 Hb_004324_170--Hb_000093_070 Hb_001722_090--Hb_001709_100 Hb_001722_090--Hb_162189_010 Hb_001722_090--Hb_007545_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0775416 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.077367 0 0 0 0

CAGE analysis