Hb_001709_100

Information

Type -
Description -
Location Contig1709: 195079-196963
Sequence    

Annotation

kegg
ID rcu:RCOM_1313660
description hypothetical protein
nr
ID XP_012086621.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067JMM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20372 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein iq-domain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15969: 195709-195999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001709_100 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_001722_090 0.000854602 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_000264_150 0.0313160504 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
4 Hb_004491_020 0.0403470194 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
5 Hb_001247_340 0.106985837 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_162189_010 0.1813277234 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_007545_040 0.1872424807 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
8 Hb_004324_170 0.1943185345 - - -
9 Hb_011316_070 0.2284686015 - - acyltransferase, putative [Ricinus communis]
10 Hb_156850_010 0.2471640672 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
11 Hb_022680_020 0.2599260096 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
12 Hb_000009_370 0.2858778046 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
13 Hb_015183_040 0.2947340428 - - -
14 Hb_028621_030 0.2986492284 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
15 Hb_132840_040 0.319259005 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
16 Hb_000093_070 0.3284163721 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
17 Hb_087999_010 0.3290957454 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
18 Hb_000025_380 0.337010345 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
19 Hb_011349_010 0.340716213 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
20 Hb_000139_160 0.3663265821 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001709_100 Hb_001709_100 Hb_001722_090 Hb_001722_090 Hb_001709_100--Hb_001722_090 Hb_000264_150 Hb_000264_150 Hb_001709_100--Hb_000264_150 Hb_004491_020 Hb_004491_020 Hb_001709_100--Hb_004491_020 Hb_001247_340 Hb_001247_340 Hb_001709_100--Hb_001247_340 Hb_162189_010 Hb_162189_010 Hb_001709_100--Hb_162189_010 Hb_007545_040 Hb_007545_040 Hb_001709_100--Hb_007545_040 Hb_001722_090--Hb_000264_150 Hb_001722_090--Hb_004491_020 Hb_001722_090--Hb_001247_340 Hb_001722_090--Hb_162189_010 Hb_001722_090--Hb_007545_040 Hb_000264_150--Hb_004491_020 Hb_000264_150--Hb_001247_340 Hb_000264_150--Hb_162189_010 Hb_000264_150--Hb_007545_040 Hb_004491_020--Hb_001247_340 Hb_004491_020--Hb_162189_010 Hb_004491_020--Hb_007545_040 Hb_001247_340--Hb_162189_010 Hb_001247_340--Hb_007545_040 Hb_004324_170 Hb_004324_170 Hb_001247_340--Hb_004324_170 Hb_162189_010--Hb_007545_040 Hb_162189_010--Hb_004324_170 Hb_156850_010 Hb_156850_010 Hb_162189_010--Hb_156850_010 Hb_132840_040 Hb_132840_040 Hb_162189_010--Hb_132840_040 Hb_007545_040--Hb_004324_170 Hb_007545_040--Hb_156850_010 Hb_007545_040--Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_007545_040--Hb_000093_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0512996 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0307337 0 0 0 0

CAGE analysis