Hb_006831_060

Information

Type -
Description -
Location Contig6831: 26039-27923
Sequence    

Annotation

kegg
ID rcu:RCOM_0820380
description hypothetical protein
nr
ID KDP29030.1
description hypothetical protein JCGZ_16419 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9Q6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16419 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53915: 27258-27574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_060 0.0 - - hypothetical protein JCGZ_16419 [Jatropha curcas]
2 Hb_007229_010 0.2571089694 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
3 Hb_000025_380 0.2674662586 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
4 Hb_001999_270 0.2887396941 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
5 Hb_153258_060 0.3141579732 - - -
6 Hb_015183_040 0.3189378492 - - -
7 Hb_005489_030 0.3241578329 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
8 Hb_022680_020 0.341614678 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
9 Hb_034243_030 0.3444349288 - - B3 domain-containing protein [Medicago truncatula]
10 Hb_002631_090 0.352591978 - - -
11 Hb_001431_110 0.3608966182 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
12 Hb_005686_070 0.3696053458 - - hypothetical protein RCOM_1078540 [Ricinus communis]
13 Hb_007853_020 0.3732240844 - - protein BOLA2 [Jatropha curcas]
14 Hb_003992_010 0.3740025195 - - -
15 Hb_004931_080 0.3847492312 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
16 Hb_001246_140 0.3919371405 - - -
17 Hb_001709_100 0.396525962 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_001722_090 0.3965938283 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
19 Hb_000264_150 0.3999982579 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
20 Hb_002837_100 0.4011261386 - - PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]

Gene co-expression network

sample Hb_006831_060 Hb_006831_060 Hb_007229_010 Hb_007229_010 Hb_006831_060--Hb_007229_010 Hb_000025_380 Hb_000025_380 Hb_006831_060--Hb_000025_380 Hb_001999_270 Hb_001999_270 Hb_006831_060--Hb_001999_270 Hb_153258_060 Hb_153258_060 Hb_006831_060--Hb_153258_060 Hb_015183_040 Hb_015183_040 Hb_006831_060--Hb_015183_040 Hb_005489_030 Hb_005489_030 Hb_006831_060--Hb_005489_030 Hb_001246_140 Hb_001246_140 Hb_007229_010--Hb_001246_140 Hb_002232_070 Hb_002232_070 Hb_007229_010--Hb_002232_070 Hb_002030_120 Hb_002030_120 Hb_007229_010--Hb_002030_120 Hb_076233_030 Hb_076233_030 Hb_007229_010--Hb_076233_030 Hb_028071_010 Hb_028071_010 Hb_007229_010--Hb_028071_010 Hb_044662_050 Hb_044662_050 Hb_000025_380--Hb_044662_050 Hb_027472_110 Hb_027472_110 Hb_000025_380--Hb_027472_110 Hb_004586_310 Hb_004586_310 Hb_000025_380--Hb_004586_310 Hb_002400_170 Hb_002400_170 Hb_000025_380--Hb_002400_170 Hb_002693_040 Hb_002693_040 Hb_000025_380--Hb_002693_040 Hb_001999_270--Hb_015183_040 Hb_105061_010 Hb_105061_010 Hb_001999_270--Hb_105061_010 Hb_034243_030 Hb_034243_030 Hb_001999_270--Hb_034243_030 Hb_009083_040 Hb_009083_040 Hb_001999_270--Hb_009083_040 Hb_001999_270--Hb_005489_030 Hb_153258_060--Hb_015183_040 Hb_153258_060--Hb_034243_030 Hb_003992_010 Hb_003992_010 Hb_153258_060--Hb_003992_010 Hb_000139_160 Hb_000139_160 Hb_153258_060--Hb_000139_160 Hb_153258_060--Hb_000025_380 Hb_015183_040--Hb_034243_030 Hb_015183_040--Hb_003992_010 Hb_002461_050 Hb_002461_050 Hb_015183_040--Hb_002461_050 Hb_004491_020 Hb_004491_020 Hb_015183_040--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_015183_040--Hb_000264_150 Hb_001431_110 Hb_001431_110 Hb_005489_030--Hb_001431_110 Hb_001016_010 Hb_001016_010 Hb_005489_030--Hb_001016_010 Hb_127743_020 Hb_127743_020 Hb_005489_030--Hb_127743_020 Hb_004545_020 Hb_004545_020 Hb_005489_030--Hb_004545_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0723184 0.0367473 0.335204 0 0 0.0320928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167126 0 0 0.0535103 0

CAGE analysis