Hb_001246_140

Information

Type -
Description -
Location Contig1246: 122521-123406
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_140 0.0 - - -
2 Hb_007229_010 0.2541788805 - - PREDICTED: uncharacterized protein LOC105130855 [Populus euphratica]
3 Hb_107281_010 0.2795244295 - - protein with unknown function [Ricinus communis]
4 Hb_002450_140 0.3270164275 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
5 Hb_002107_090 0.3270744783 transcription factor TF Family: bZIP Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
6 Hb_028071_010 0.3273575791 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
7 Hb_000922_420 0.329657108 - - glutaredoxin-1, grx1, putative [Ricinus communis]
8 Hb_001301_240 0.3364750626 - - -
9 Hb_005155_020 0.3374864717 - - -
10 Hb_003680_110 0.3388617172 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000424_020 0.3458939139 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
12 Hb_001269_510 0.3475328741 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_013016_010 0.3515822242 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000003_140 0.3518772689 - - hypothetical protein glysoja_047034, partial [Glycine soja]
15 Hb_001300_100 0.3523436602 - - -
16 Hb_000172_490 0.3532866762 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
17 Hb_002450_040 0.3547752909 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
18 Hb_002631_090 0.3565481571 - - -
19 Hb_073973_030 0.3578144354 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
20 Hb_000365_170 0.3588469112 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001246_140 Hb_001246_140 Hb_007229_010 Hb_007229_010 Hb_001246_140--Hb_007229_010 Hb_107281_010 Hb_107281_010 Hb_001246_140--Hb_107281_010 Hb_002450_140 Hb_002450_140 Hb_001246_140--Hb_002450_140 Hb_002107_090 Hb_002107_090 Hb_001246_140--Hb_002107_090 Hb_028071_010 Hb_028071_010 Hb_001246_140--Hb_028071_010 Hb_000922_420 Hb_000922_420 Hb_001246_140--Hb_000922_420 Hb_006831_060 Hb_006831_060 Hb_007229_010--Hb_006831_060 Hb_002232_070 Hb_002232_070 Hb_007229_010--Hb_002232_070 Hb_002030_120 Hb_002030_120 Hb_007229_010--Hb_002030_120 Hb_076233_030 Hb_076233_030 Hb_007229_010--Hb_076233_030 Hb_007229_010--Hb_028071_010 Hb_001300_100 Hb_001300_100 Hb_107281_010--Hb_001300_100 Hb_005155_020 Hb_005155_020 Hb_107281_010--Hb_005155_020 Hb_000608_040 Hb_000608_040 Hb_107281_010--Hb_000608_040 Hb_005535_060 Hb_005535_060 Hb_107281_010--Hb_005535_060 Hb_027472_210 Hb_027472_210 Hb_107281_010--Hb_027472_210 Hb_107281_010--Hb_002450_140 Hb_003026_030 Hb_003026_030 Hb_002450_140--Hb_003026_030 Hb_001269_510 Hb_001269_510 Hb_002450_140--Hb_001269_510 Hb_000997_150 Hb_000997_150 Hb_002450_140--Hb_000997_150 Hb_044155_010 Hb_044155_010 Hb_002450_140--Hb_044155_010 Hb_023001_070 Hb_023001_070 Hb_002450_140--Hb_023001_070 Hb_002450_140--Hb_001300_100 Hb_000345_260 Hb_000345_260 Hb_002107_090--Hb_000345_260 Hb_002218_100 Hb_002218_100 Hb_002107_090--Hb_002218_100 Hb_000987_100 Hb_000987_100 Hb_002107_090--Hb_000987_100 Hb_000123_140 Hb_000123_140 Hb_002107_090--Hb_000123_140 Hb_005194_040 Hb_005194_040 Hb_002107_090--Hb_005194_040 Hb_009411_040 Hb_009411_040 Hb_002107_090--Hb_009411_040 Hb_028071_010--Hb_000922_420 Hb_006671_020 Hb_006671_020 Hb_028071_010--Hb_006671_020 Hb_004342_020 Hb_004342_020 Hb_028071_010--Hb_004342_020 Hb_002067_010 Hb_002067_010 Hb_028071_010--Hb_002067_010 Hb_000424_020 Hb_000424_020 Hb_028071_010--Hb_000424_020 Hb_013016_010 Hb_013016_010 Hb_028071_010--Hb_013016_010 Hb_000922_420--Hb_004342_020 Hb_002450_040 Hb_002450_040 Hb_000922_420--Hb_002450_040 Hb_006831_100 Hb_006831_100 Hb_000922_420--Hb_006831_100 Hb_003702_040 Hb_003702_040 Hb_000922_420--Hb_003702_040 Hb_000297_110 Hb_000297_110 Hb_000922_420--Hb_000297_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157318 0.280354 1.06202 0 0.394275 0.192877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383909 0.0754349 0 0 0

CAGE analysis